Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM35Q9UPQ4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM35Q9UPQ4 AC018665.1-201ENST00000622927 1362 ntBASIC20.06■□□□□ 0.8
TRIM35Q9UPQ4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM35Q9UPQ4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
TRIM35Q9UPQ4 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM35Q9UPQ4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM35Q9UPQ4 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 AC005229.1-201ENST00000392885 409 ntBASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM35Q9UPQ4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 AL138709.1-201ENST00000614840 1693 ntBASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 EIF3FP3-201ENST00000434851 1086 ntBASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 BCRP2-202ENST00000447763 634 ntBASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 BCRP6-201ENST00000510112 632 ntBASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 BCRP7-201ENST00000511549 544 ntBASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 ZEB1-AS1-208ENST00000607166 2503 ntBASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM35Q9UPQ4 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 KRT8P14-201ENST00000414254 1442 ntBASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 ACTBP8-201ENST00000403258 1108 ntBASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 AC114812.1-204ENST00000449669 728 ntBASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 KRT17P8-201ENST00000540749 863 ntBASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms