Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
MKS1Q9NXB0 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.05
MKS1Q9NXB0 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.33■□□□□ 0.05
MKS1Q9NXB0 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
MKS1Q9NXB0 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 MED15P5-201ENST00000423150 992 ntBASIC15.33■□□□□ 0.04
MKS1Q9NXB0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 AL133215.2-201ENST00000609242 977 ntBASIC15.33■□□□□ 0.04
MKS1Q9NXB0 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 AC067930.6-201ENST00000623257 4947 ntBASIC15.33■□□□□ 0.04
MKS1Q9NXB0 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MKS1Q9NXB0 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.33■□□□□ 0.04
MKS1Q9NXB0 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 PKD1P5-201ENST00000532415 10291 ntBASIC15.32■□□□□ 0.04
MKS1Q9NXB0 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 AC092135.3-201ENST00000624151 1846 ntBASIC15.32■□□□□ 0.04
MKS1Q9NXB0 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 AC139749.1-202ENST00000617529 3139 ntBASIC15.32■□□□□ 0.04
MKS1Q9NXB0 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 TIMM8BP1-201ENST00000452384 211 ntBASIC15.32■□□□□ 0.04
MKS1Q9NXB0 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 AC097359.2-201ENST00000604992 2389 ntBASIC15.32■□□□□ 0.04
MKS1Q9NXB0 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
MKS1Q9NXB0 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms