Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 AC242376.2-201ENST00000619355 883 ntBASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 AL353726.2-201ENST00000623259 884 ntBASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 AL805961.1-201ENST00000642026 753 ntBASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 PCDH8P1-201ENST00000428983 2773 ntBASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 AC018629.1-201ENST00000623381 1736 ntBASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 MIR1227-201ENST00000408484 88 ntBASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 IGHV3-37-201ENST00000518544 340 ntBASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 AL109837.1-201ENST00000603272 613 ntBASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 NAP1L6-202ENST00000641404 1222 ntBASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 AC078991.1-201ENST00000437297 610 ntBASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 FAM58BP-201ENST00000439056 645 ntBASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 RN7SL8P-201ENST00000461771 266 ntBASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SHANK3Q9BYB0 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 NEU3-205ENST00000531619 582 ntTSL 5 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 AC135983.4-201ENST00000564116 1262 ntBASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 NAT9-211ENST00000580632 799 ntTSL 3 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC19.52■□□□□ 0.72
SHANK3Q9BYB0 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
SHANK3Q9BYB0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHANK3Q9BYB0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SHANK3Q9BYB0 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
SHANK3Q9BYB0 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms