Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00477Q96M19 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
LINC00477Q96M19 AC091951.1-201ENST00000512854 2465 ntBASIC11.7□□□□□ -0.54
LINC00477Q96M19 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 AL035456.1-201ENST00000456064 1369 ntBASIC11.7□□□□□ -0.54
LINC00477Q96M19 AC007292.2-201ENST00000593524 1812 ntBASIC11.7□□□□□ -0.54
LINC00477Q96M19 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 RBM39-205ENST00000397370 612 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 SPDYE17-201ENST00000412399 783 ntBASIC11.7□□□□□ -0.54
LINC00477Q96M19 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 ST20-AS1-201ENST00000560255 4223 ntBASIC11.7□□□□□ -0.54
LINC00477Q96M19 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00477Q96M19 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC11.7□□□□□ -0.54
LINC00477Q96M19 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 ELL2P1-201ENST00000413990 1906 ntBASIC11.69□□□□□ -0.54
LINC00477Q96M19 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 CCND1-203ENST00000536559 553 ntTSL 3 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms