Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AL589702.1-201ENST00000641229 1509 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 CROCCP4-201ENST00000457096 498 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC074044.1-201ENST00000609673 707 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MIR6805-201ENST00000615055 62 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC144831.1-201ENST00000573312 2656 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AL033527.5-201ENST00000641382 801 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 MGST3-203ENST00000367885 680 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 REXO1L1P-202ENST00000608646 1974 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PNMA3-203ENST00000619635 3627 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC006538.1-201ENST00000567905 1585 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ACSF3-218ENST00000614302 3751 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ATP8B3-202ENST00000525591 4014 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC105020.1-201ENST00000435356 2205 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms