Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 AC015818.8-201ENST00000587907 1519 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 MST1L-201ENST00000442552 2185 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SYNE4Q8N205 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.14■□□□□ 0.66
SYNE4Q8N205 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SYNE4Q8N205 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 AL662890.1-201ENST00000396818 632 ntBASIC19.14■□□□□ 0.65
SYNE4Q8N205 POM121L8P-201ENST00000417732 1281 ntBASIC19.14■□□□□ 0.65
SYNE4Q8N205 NUS1P3-201ENST00000423502 862 ntBASIC19.14■□□□□ 0.65
SYNE4Q8N205 POM121L9P-203ENST00000441984 1285 ntBASIC19.14■□□□□ 0.65
SYNE4Q8N205 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 EIF4HP1-201ENST00000453115 687 ntBASIC19.14■□□□□ 0.65
SYNE4Q8N205 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 EEF1DP1-201ENST00000585891 896 ntBASIC19.14■□□□□ 0.65
SYNE4Q8N205 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 AC020914.3-201ENST00000594712 304 ntBASIC19.14■□□□□ 0.65
SYNE4Q8N205 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.14■□□□□ 0.65
SYNE4Q8N205 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE4Q8N205 AL157414.3-201ENST00000624276 1954 ntBASIC19.13■□□□□ 0.65
SYNE4Q8N205 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.13■□□□□ 0.65
SYNE4Q8N205 CICP11-201ENST00000434745 2827 ntBASIC19.13■□□□□ 0.65
SYNE4Q8N205 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 RPS15-201ENST00000233609 534 ntTSL 2 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 HLA-K-203ENST00000430151 1046 ntBASIC19.13■□□□□ 0.65
SYNE4Q8N205 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 RPS15-205ENST00000586686 562 ntTSL 5 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 RPS15-208ENST00000591804 711 ntTSL 5 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.13■□□□□ 0.65
SYNE4Q8N205 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE4Q8N205 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 SLC9A7P1-202ENST00000556476 2239 ntBASIC19.12■□□□□ 0.65
SYNE4Q8N205 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 TISP43-201ENST00000409793 538 ntTSL 4 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms