Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 KRT17P7-201ENST00000451704 1104 ntBASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 AP001582.1-201ENST00000525856 295 ntBASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 CLUHP6-201ENST00000580789 941 ntBASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 KRT8P44-201ENST00000441609 1350 ntBASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
C9orf40Q8IXQ3 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 TMEM14DP-201ENST00000422205 345 ntBASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
C9orf40Q8IXQ3 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms