Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 KRT18P43-201ENST00000469825 1281 ntBASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 AL132655.2-201ENST00000596276 594 ntBASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 SSR4P1-203ENST00000599569 2260 ntBASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
NUP54Q7Z3B4 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 AC004790.1-201ENST00000612686 536 ntBASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 AL158212.4-201ENST00000624062 1286 ntBASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
NUP54Q7Z3B4 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
NUP54Q7Z3B4 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.11
NUP54Q7Z3B4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms