Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGCS2P54868 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 NKAIN1P1-201ENST00000435754 582 ntBASIC17.75■□□□□ 0.43
HMGCS2P54868 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGCS2P54868 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC17.75■□□□□ 0.43
HMGCS2P54868 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.75■□□□□ 0.43
HMGCS2P54868 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC17.75■□□□□ 0.43
HMGCS2P54868 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 AC105129.2-201ENST00000559536 390 ntBASIC17.75■□□□□ 0.43
HMGCS2P54868 AC005730.2-201ENST00000564549 1184 ntBASIC17.75■□□□□ 0.43
HMGCS2P54868 KLK11-210ENST00000600362 759 ntTSL 3 BASIC17.75■□□□□ 0.43
HMGCS2P54868 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.75■□□□□ 0.43
HMGCS2P54868 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGCS2P54868 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGCS2P54868 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGCS2P54868 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 AC024909.3-201ENST00000611513 2257 ntBASIC17.74■□□□□ 0.43
HMGCS2P54868 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HMGCS2P54868 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
HMGCS2P54868 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 CROCCP1-201ENST00000426910 5675 ntBASIC17.74■□□□□ 0.43
HMGCS2P54868 AL603832.2-201ENST00000566195 2125 ntBASIC17.74■□□□□ 0.43
HMGCS2P54868 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGCS2P54868 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGCS2P54868 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HMGCS2P54868 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HMGCS2P54868 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGCS2P54868 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.74■□□□□ 0.43
HMGCS2P54868 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.74■□□□□ 0.43
HMGCS2P54868 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 HIST2H2BB-201ENST00000449108 381 ntBASIC17.74■□□□□ 0.43
HMGCS2P54868 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGCS2P54868 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 AC079328.1-201ENST00000560358 952 ntBASIC17.74■□□□□ 0.43
HMGCS2P54868 ZACNP1-201ENST00000612259 710 ntBASIC17.74■□□□□ 0.43
HMGCS2P54868 RETN-203ENST00000629642 400 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGCS2P54868 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 AC010491.1-201ENST00000563101 2797 ntBASIC17.74■□□□□ 0.43
HMGCS2P54868 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
HMGCS2P54868 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGCS2P54868 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGCS2P54868 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms