Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC21.15■□□□□ 0.98
MSH6P52701 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
MSH6P52701 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSH6P52701 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
MSH6P52701 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSH6P52701 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
MSH6P52701 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
MSH6P52701 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
MSH6P52701 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC21.14■□□□□ 0.98
MSH6P52701 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
MSH6P52701 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC21.14■□□□□ 0.98
MSH6P52701 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC21.14■□□□□ 0.98
MSH6P52701 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC21.14■□□□□ 0.98
MSH6P52701 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
MSH6P52701 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC21.14■□□□□ 0.98
MSH6P52701 RPL35-206ENST00000629845 340 ntTSL 5 BASIC21.14■□□□□ 0.98
MSH6P52701 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC21.14■□□□□ 0.98
MSH6P52701 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH6P52701 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH6P52701 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC21.14■□□□□ 0.97
MSH6P52701 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH6P52701 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH6P52701 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH6P52701 AP000593.2-201ENST00000542775 1433 ntBASIC21.14■□□□□ 0.97
MSH6P52701 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC21.14■□□□□ 0.97
MSH6P52701 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH6P52701 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH6P52701 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH6P52701 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
MSH6P52701 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
MSH6P52701 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC21.14■□□□□ 0.97
MSH6P52701 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH6P52701 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC21.14■□□□□ 0.97
MSH6P52701 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH6P52701 AC055811.4-201ENST00000624039 1754 ntBASIC21.13■□□□□ 0.97
MSH6P52701 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH6P52701 OR2K2-202ENST00000374428 1038 ntBASIC21.13■□□□□ 0.97
MSH6P52701 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC21.13■□□□□ 0.97
MSH6P52701 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH6P52701 RN7SL258P-201ENST00000478664 300 ntBASIC21.13■□□□□ 0.97
MSH6P52701 HLA-J-204ENST00000495278 958 ntBASIC21.13■□□□□ 0.97
MSH6P52701 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC21.13■□□□□ 0.97
MSH6P52701 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC21.13■□□□□ 0.97
MSH6P52701 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC21.13■□□□□ 0.97
MSH6P52701 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC21.13■□□□□ 0.97
MSH6P52701 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC21.13■□□□□ 0.97
MSH6P52701 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH6P52701 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC21.13■□□□□ 0.97
MSH6P52701 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH6P52701 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
MSH6P52701 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH6P52701 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH6P52701 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH6P52701 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH6P52701 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
MSH6P52701 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
MSH6P52701 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
MSH6P52701 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH6P52701 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH6P52701 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC21.13■□□□□ 0.97
MSH6P52701 CAP2P1-201ENST00000557743 1390 ntBASIC21.13■□□□□ 0.97
MSH6P52701 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH6P52701 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
MSH6P52701 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH6P52701 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC21.12■□□□□ 0.97
MSH6P52701 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 AC012362.1-201ENST00000434906 739 ntBASIC21.12■□□□□ 0.97
MSH6P52701 AL139008.1-201ENST00000437894 228 ntBASIC21.12■□□□□ 0.97
MSH6P52701 FAM58BP-201ENST00000439056 645 ntBASIC21.12■□□□□ 0.97
MSH6P52701 VDAC1P1-201ENST00000439229 848 ntBASIC21.12■□□□□ 0.97
MSH6P52701 NAGK-204ENST00000443872 878 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH6P52701 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH6P52701 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH6P52701 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH6P52701 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH6P52701 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH6P52701 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH6P52701 AC004466.1-201ENST00000599515 1080 ntBASIC21.12■□□□□ 0.97
MSH6P52701 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
MSH6P52701 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH6P52701 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH6P52701 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH6P52701 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
MSH6P52701 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms