Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
VPS13AQ96RL7 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.02■□□□□ -0
VPS13AQ96RL7 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
VPS13AQ96RL7 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.02■□□□□ -0
VPS13AQ96RL7 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 AP000356.3-201ENST00000382243 753 ntBASIC15.02□□□□□ -0.01
VPS13AQ96RL7 AQP7P5-201ENST00000428759 1049 ntBASIC15.02□□□□□ -0.01
VPS13AQ96RL7 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 AQP7P4-201ENST00000447083 1042 ntBASIC15.02□□□□□ -0.01
VPS13AQ96RL7 AQP7P2-201ENST00000453967 1041 ntBASIC15.02□□□□□ -0.01
VPS13AQ96RL7 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 OR10B1P-201ENST00000601666 907 ntBASIC15.02□□□□□ -0.01
VPS13AQ96RL7 AQP7P3-201ENST00000624547 1041 ntBASIC15.02□□□□□ -0.01
VPS13AQ96RL7 AC002472.4-201ENST00000641915 272 ntBASIC15.02□□□□□ -0.01
VPS13AQ96RL7 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
VPS13AQ96RL7 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 RN7SL163P-201ENST00000583100 276 ntBASIC15.01□□□□□ -0.01
VPS13AQ96RL7 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 MIR3677-201ENST00000578964 60 ntBASIC15.01□□□□□ -0.01
VPS13AQ96RL7 Z98259.2-201ENST00000641583 609 ntBASIC15.01□□□□□ -0.01
VPS13AQ96RL7 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 AC103810.10-201ENST00000606504 343 ntBASIC15.01□□□□□ -0.01
VPS13AQ96RL7 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 NOC2LP2-201ENST00000407594 1944 ntBASIC15.01□□□□□ -0.01
VPS13AQ96RL7 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13AQ96RL7 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15□□□□□ -0.01
VPS13AQ96RL7 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15□□□□□ -0.01
VPS13AQ96RL7 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 CTSL-202ENST00000342020 933 ntTSL 2 BASIC15□□□□□ -0.01
VPS13AQ96RL7 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15□□□□□ -0.01
VPS13AQ96RL7 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC15□□□□□ -0.01
VPS13AQ96RL7 AC011247.3-201ENST00000603297 438 ntBASIC15□□□□□ -0.01
VPS13AQ96RL7 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC15□□□□□ -0.01
VPS13AQ96RL7 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 LTB4R2-202ENST00000528054 3092 ntBASIC15□□□□□ -0.01
VPS13AQ96RL7 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
VPS13AQ96RL7 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
VPS13AQ96RL7 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15□□□□□ -0.01
VPS13AQ96RL7 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
VPS13AQ96RL7 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
VPS13AQ96RL7 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15□□□□□ -0.01
VPS13AQ96RL7 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC15□□□□□ -0.01
VPS13AQ96RL7 COX20P1-201ENST00000366529 357 ntBASIC15□□□□□ -0.01
VPS13AQ96RL7 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15□□□□□ -0.01
VPS13AQ96RL7 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC15□□□□□ -0.01
VPS13AQ96RL7 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
VPS13AQ96RL7 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms