Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 CICP11-201ENST00000434745 2827 ntBASIC16.85■□□□□ 0.29
CCDC42Q96M95 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 AC023274.1-201ENST00000418278 595 ntBASIC16.85■□□□□ 0.29
CCDC42Q96M95 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 SLC25A39P2-201ENST00000537614 270 ntBASIC16.85■□□□□ 0.29
CCDC42Q96M95 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 TIMM8BP1-201ENST00000452384 211 ntBASIC16.84■□□□□ 0.29
CCDC42Q96M95 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 SLC25A1P1-201ENST00000528351 927 ntBASIC16.84■□□□□ 0.29
CCDC42Q96M95 RARRES2P9-201ENST00000565168 469 ntBASIC16.84■□□□□ 0.29
CCDC42Q96M95 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 BX640515.1-201ENST00000617215 977 ntBASIC16.84■□□□□ 0.29
CCDC42Q96M95 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 AC084364.1-201ENST00000551967 1556 ntBASIC16.84■□□□□ 0.29
CCDC42Q96M95 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC42Q96M95 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 KCP-203ENST00000610776 5108 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC42Q96M95 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC42Q96M95 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC42Q96M95 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC42Q96M95 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC42Q96M95 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC42Q96M95 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16.83■□□□□ 0.29
CCDC42Q96M95 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC42Q96M95 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms