Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 LINC02199-201ENST00000506655 2702 ntBASIC15.09■□□□□ 0.01
LMX1AQ8TE12 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 KLF2P2-201ENST00000416807 1039 ntBASIC15.09■□□□□ 0.01
LMX1AQ8TE12 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 AC091271.1-201ENST00000611877 1162 ntBASIC15.09■□□□□ 0.01
LMX1AQ8TE12 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.09■□□□□ 0.01
LMX1AQ8TE12 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 KRT8P44-201ENST00000441609 1350 ntBASIC15.09■□□□□ 0.01
LMX1AQ8TE12 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
LMX1AQ8TE12 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
LMX1AQ8TE12 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.08■□□□□ 0
LMX1AQ8TE12 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 AC006001.1-201ENST00000325130 474 ntBASIC15.08■□□□□ 0
LMX1AQ8TE12 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
LMX1AQ8TE12 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.08■□□□□ 0
LMX1AQ8TE12 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.08■□□□□ 0
LMX1AQ8TE12 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 AC114812.1-204ENST00000449669 728 ntBASIC15.08■□□□□ 0
LMX1AQ8TE12 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 AL590640.2-201ENST00000457038 527 ntBASIC15.08■□□□□ 0
LMX1AQ8TE12 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.08■□□□□ 0
LMX1AQ8TE12 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.08■□□□□ 0
LMX1AQ8TE12 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.08■□□□□ 0
LMX1AQ8TE12 DUX4L45-201ENST00000566406 1057 ntBASIC15.08■□□□□ 0
LMX1AQ8TE12 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.08■□□□□ 0
LMX1AQ8TE12 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.08■□□□□ 0
LMX1AQ8TE12 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.08■□□□□ 0
LMX1AQ8TE12 MIR6787-201ENST00000616675 61 ntBASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms