Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 FO681548.1-201ENST00000455617 1132 ntBASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 AL158070.2-201ENST00000623713 1621 ntBASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UBE3BQ7Z3V4 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 ACTBP8-201ENST00000403258 1108 ntBASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 AC004066.1-201ENST00000502488 802 ntBASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 AL583810.1-201ENST00000553344 1045 ntBASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 PRSS30P-206ENST00000641773 873 ntBASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC19.27■□□□□ 0.68
UBE3BQ7Z3V4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC19.27■□□□□ 0.67
UBE3BQ7Z3V4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC19.27■□□□□ 0.67
UBE3BQ7Z3V4 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 STK33-217ENST00000534493 1895 ntTSL 2 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 CNN2P8-201ENST00000421872 913 ntBASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 FAM197Y7-201ENST00000432892 766 ntBASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 AL590640.2-201ENST00000457038 527 ntBASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 PAUPAR-201ENST00000630360 2965 ntBASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 RHOXF1P1-202ENST00000635473 501 ntBASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
UBE3BQ7Z3V4 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UBE3BQ7Z3V4 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
UBE3BQ7Z3V4 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UBE3BQ7Z3V4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
UBE3BQ7Z3V4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms