Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
USP54Q70EL1 AMT-239ENST00000636865 1914 ntTSL 5 BASIC20.15■□□□□ 0.82
USP54Q70EL1 AC020658.6-201ENST00000623564 1870 ntBASIC20.15■□□□□ 0.82
USP54Q70EL1 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP54Q70EL1 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP54Q70EL1 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC20.14■□□□□ 0.82
USP54Q70EL1 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP54Q70EL1 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
USP54Q70EL1 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
USP54Q70EL1 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC20.14■□□□□ 0.81
USP54Q70EL1 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 MAGEA5-201ENST00000446757 942 ntBASIC20.14■□□□□ 0.81
USP54Q70EL1 AC242376.1-201ENST00000559033 726 ntBASIC20.14■□□□□ 0.81
USP54Q70EL1 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC20.14■□□□□ 0.81
USP54Q70EL1 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC20.14■□□□□ 0.81
USP54Q70EL1 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC20.14■□□□□ 0.81
USP54Q70EL1 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC20.14■□□□□ 0.81
USP54Q70EL1 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
USP54Q70EL1 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 CYP4F23P-201ENST00000593402 1579 ntBASIC20.14■□□□□ 0.81
USP54Q70EL1 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP54Q70EL1 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.14■□□□□ 0.81
USP54Q70EL1 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.14■□□□□ 0.81
USP54Q70EL1 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP54Q70EL1 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP54Q70EL1 KRT8P21-201ENST00000430398 1491 ntBASIC20.13■□□□□ 0.81
USP54Q70EL1 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
USP54Q70EL1 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP54Q70EL1 RPL18P13-201ENST00000478088 569 ntBASIC20.13■□□□□ 0.81
USP54Q70EL1 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC20.13■□□□□ 0.81
USP54Q70EL1 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC20.13■□□□□ 0.81
USP54Q70EL1 AC100827.2-201ENST00000563214 1194 ntBASIC20.13■□□□□ 0.81
USP54Q70EL1 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
USP54Q70EL1 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP54Q70EL1 ZBED1P1-201ENST00000502364 1930 ntBASIC20.13■□□□□ 0.81
USP54Q70EL1 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.13■□□□□ 0.81
USP54Q70EL1 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC20.13■□□□□ 0.81
USP54Q70EL1 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
USP54Q70EL1 AC026471.1-201ENST00000564629 3026 ntBASIC20.13■□□□□ 0.81
USP54Q70EL1 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC20.13■□□□□ 0.81
USP54Q70EL1 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP54Q70EL1 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC20.13■□□□□ 0.81
USP54Q70EL1 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP54Q70EL1 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC20.13■□□□□ 0.81
USP54Q70EL1 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
USP54Q70EL1 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
USP54Q70EL1 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC20.13■□□□□ 0.81
USP54Q70EL1 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
USP54Q70EL1 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
USP54Q70EL1 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USP54Q70EL1 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC20.13■□□□□ 0.81
USP54Q70EL1 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC20.13■□□□□ 0.81
USP54Q70EL1 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC20.13■□□□□ 0.81
USP54Q70EL1 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC20.13■□□□□ 0.81
USP54Q70EL1 PAM16-211ENST00000575848 518 ntTSL 3 BASIC20.13■□□□□ 0.81
USP54Q70EL1 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
USP54Q70EL1 AL353770.1-201ENST00000614915 403 ntBASIC20.13■□□□□ 0.81
USP54Q70EL1 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
USP54Q70EL1 FZD10-202ENST00000539839 3282 ntBASIC20.12■□□□□ 0.81
USP54Q70EL1 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC20.12■□□□□ 0.81
USP54Q70EL1 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
USP54Q70EL1 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC20.12■□□□□ 0.81
USP54Q70EL1 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 AL133466.1-201ENST00000447582 150 ntBASIC20.12■□□□□ 0.81
USP54Q70EL1 NDUFS6P1-201ENST00000485187 316 ntBASIC20.12■□□□□ 0.81
USP54Q70EL1 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC20.12■□□□□ 0.81
USP54Q70EL1 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
USP54Q70EL1 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC20.12■□□□□ 0.81
USP54Q70EL1 BX088702.1-201ENST00000610784 235 ntBASIC20.12■□□□□ 0.81
USP54Q70EL1 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC20.12■□□□□ 0.81
USP54Q70EL1 AL359258.3-201ENST00000622910 2331 ntBASIC20.12■□□□□ 0.81
USP54Q70EL1 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP54Q70EL1 AMT-204ENST00000427987 1646 ntTSL 5 BASIC20.12■□□□□ 0.81
USP54Q70EL1 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
USP54Q70EL1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms