Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 REXO1L2P-201ENST00000425429 2069 ntBASIC10.86□□□□□ -0.67
PRKDCP78527 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
PRKDCP78527 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC10.86□□□□□ -0.67
PRKDCP78527 PPIA-208ENST00000489459 907 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC10.86□□□□□ -0.67
PRKDCP78527 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC10.86□□□□□ -0.67
PRKDCP78527 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 PPIA-210ENST00000620047 827 ntTSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC10.86□□□□□ -0.67
PRKDCP78527 NQO2-204ENST00000380454 851 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC10.86□□□□□ -0.67
PRKDCP78527 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
PRKDCP78527 AL603764.1-201ENST00000636452 321 ntBASIC10.86□□□□□ -0.67
PRKDCP78527 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 AC005915.1-201ENST00000624912 2018 ntBASIC10.86□□□□□ -0.67
PRKDCP78527 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC10.86□□□□□ -0.67
PRKDCP78527 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC10.86□□□□□ -0.67
PRKDCP78527 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC10.86□□□□□ -0.67
PRKDCP78527 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC10.86□□□□□ -0.67
PRKDCP78527 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC10.86□□□□□ -0.67
PRKDCP78527 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 MIR6746-201ENST00000620971 63 ntBASIC10.86□□□□□ -0.67
PRKDCP78527 HELLS-212ENST00000630929 400 ntTSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 AC106820.2-201ENST00000563775 3264 ntBASIC10.86□□□□□ -0.67
PRKDCP78527 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 FTX-216ENST00000638985 1367 ntTSL 5 BASIC10.85□□□□□ -0.67
PRKDCP78527 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
PRKDCP78527 FAM197Y6-201ENST00000420524 766 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 DUTP3-201ENST00000450025 415 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
PRKDCP78527 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC10.85□□□□□ -0.67
PRKDCP78527 AC140113.1-201ENST00000603467 169 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 AC008972.2-201ENST00000606587 494 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC10.85□□□□□ -0.67
PRKDCP78527 ZNF436-AS1-201ENST00000335648 2547 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
PRKDCP78527 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC10.85□□□□□ -0.67
PRKDCP78527 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC10.85□□□□□ -0.67
PRKDCP78527 AC092570.1-201ENST00000414446 469 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC10.85□□□□□ -0.67
PRKDCP78527 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC10.85□□□□□ -0.67
PRKDCP78527 AC006328.1-201ENST00000437571 379 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 RN7SL81P-201ENST00000493781 261 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 AC092612.1-201ENST00000514501 998 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 AC090820.1-201ENST00000519722 591 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC10.85□□□□□ -0.67
PRKDCP78527 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 AC141586.5-201ENST00000624546 2050 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 GEMIN8P4-201ENST00000380526 729 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC10.85□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms