Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA1P55317 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA1P55317 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA1P55317 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA1P55317 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.08■□□□□ 0.01
FOXA1P55317 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.08■□□□□ 0.01
FOXA1P55317 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA1P55317 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA1P55317 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.08■□□□□ 0.01
FOXA1P55317 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA1P55317 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
FOXA1P55317 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA1P55317 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
FOXA1P55317 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.08■□□□□ 0
FOXA1P55317 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
FOXA1P55317 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.08■□□□□ 0
FOXA1P55317 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.08■□□□□ 0
FOXA1P55317 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
FOXA1P55317 AL080243.2-201ENST00000418783 582 ntBASIC15.08■□□□□ 0
FOXA1P55317 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.08■□□□□ 0
FOXA1P55317 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.08■□□□□ 0
FOXA1P55317 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
FOXA1P55317 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.08■□□□□ 0
FOXA1P55317 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.08■□□□□ 0
FOXA1P55317 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.08■□□□□ 0
FOXA1P55317 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
FOXA1P55317 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
FOXA1P55317 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.08■□□□□ 0
FOXA1P55317 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
FOXA1P55317 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.08■□□□□ 0
FOXA1P55317 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA1P55317 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0
FOXA1P55317 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.07■□□□□ 0
FOXA1P55317 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.07■□□□□ 0
FOXA1P55317 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.07■□□□□ 0
FOXA1P55317 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
FOXA1P55317 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
FOXA1P55317 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.07■□□□□ 0
FOXA1P55317 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.07■□□□□ 0
FOXA1P55317 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.07■□□□□ 0
FOXA1P55317 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.07■□□□□ 0
FOXA1P55317 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.07■□□□□ 0
FOXA1P55317 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.07■□□□□ 0
FOXA1P55317 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.07■□□□□ 0
FOXA1P55317 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.07■□□□□ 0
FOXA1P55317 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.07■□□□□ 0
FOXA1P55317 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA1P55317 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.07■□□□□ 0
FOXA1P55317 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 Z97205.2-201ENST00000564697 1639 ntBASIC15.06■□□□□ 0
FOXA1P55317 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.06■□□□□ 0
FOXA1P55317 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.06■□□□□ 0
FOXA1P55317 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms