Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.49■□□□□ 0.23
LIG3P49916 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LIG3P49916 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.49■□□□□ 0.23
LIG3P49916 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 RFPL4AP1-201ENST00000530883 850 ntBASIC16.49■□□□□ 0.23
LIG3P49916 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LIG3P49916 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.49■□□□□ 0.23
LIG3P49916 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.49■□□□□ 0.23
LIG3P49916 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 AC073389.1-201ENST00000595595 795 ntBASIC16.49■□□□□ 0.23
LIG3P49916 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 AC020765.3-201ENST00000613051 740 ntBASIC16.49■□□□□ 0.23
LIG3P49916 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.49■□□□□ 0.23
LIG3P49916 TMBIM7P-203ENST00000641617 1718 ntBASIC16.49■□□□□ 0.23
LIG3P49916 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.49■□□□□ 0.23
LIG3P49916 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.49■□□□□ 0.23
LIG3P49916 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.49■□□□□ 0.23
LIG3P49916 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
LIG3P49916 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC16.49■□□□□ 0.23
LIG3P49916 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
LIG3P49916 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.49■□□□□ 0.23
LIG3P49916 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
LIG3P49916 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIG3P49916 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LIG3P49916 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
LIG3P49916 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LIG3P49916 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LIG3P49916 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
LIG3P49916 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LIG3P49916 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
LIG3P49916 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LIG3P49916 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.48■□□□□ 0.23
LIG3P49916 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LIG3P49916 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.48■□□□□ 0.23
LIG3P49916 AC142381.1-201ENST00000426099 345 ntBASIC16.48■□□□□ 0.23
LIG3P49916 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.48■□□□□ 0.23
LIG3P49916 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LIG3P49916 AC026150.2-201ENST00000564693 1156 ntBASIC16.48■□□□□ 0.23
LIG3P49916 AP001059.3-201ENST00000619053 235 ntBASIC16.48■□□□□ 0.23
LIG3P49916 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.48■□□□□ 0.23
LIG3P49916 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.48■□□□□ 0.23
LIG3P49916 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
LIG3P49916 AC020658.6-201ENST00000623564 1870 ntBASIC16.48■□□□□ 0.23
LIG3P49916 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIG3P49916 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
LIG3P49916 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 ALG1L8P-201ENST00000533887 760 ntBASIC16.47■□□□□ 0.23
LIG3P49916 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
LIG3P49916 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 Z92544.3-201ENST00000624747 417 ntBASIC16.47■□□□□ 0.23
LIG3P49916 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LIG3P49916 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIG3P49916 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.47■□□□□ 0.23
LIG3P49916 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms