Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC12.83□□□□□ -0.36
CDX1P47902 FAM58DP-201ENST00000428076 619 ntBASIC12.83□□□□□ -0.36
CDX1P47902 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 AC067863.1-201ENST00000494933 530 ntBASIC12.83□□□□□ -0.36
CDX1P47902 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.83□□□□□ -0.36
CDX1P47902 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC12.83□□□□□ -0.36
CDX1P47902 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 AP000842.3-202ENST00000569238 1080 ntBASIC12.83□□□□□ -0.36
CDX1P47902 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC12.83□□□□□ -0.36
CDX1P47902 AC073389.1-201ENST00000595595 795 ntBASIC12.83□□□□□ -0.36
CDX1P47902 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.83□□□□□ -0.36
CDX1P47902 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
CDX1P47902 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 SNX33P1-201ENST00000592116 1762 ntBASIC12.83□□□□□ -0.36
CDX1P47902 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 DGCR9-201ENST00000609630 2415 ntBASIC12.83□□□□□ -0.36
CDX1P47902 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 PCDHA3-202ENST00000532566 4594 ntBASIC12.83□□□□□ -0.36
CDX1P47902 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
CDX1P47902 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 POR-201ENST00000394893 2532 ntTSL 5 BASIC12.83□□□□□ -0.36
CDX1P47902 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CDX1P47902 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CDX1P47902 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC12.83□□□□□ -0.36
CDX1P47902 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CDX1P47902 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.82□□□□□ -0.36
CDX1P47902 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.82□□□□□ -0.36
CDX1P47902 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 DPM2-202ENST00000373110 738 ntTSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 HNRNPFP1-201ENST00000391730 1133 ntBASIC12.82□□□□□ -0.36
CDX1P47902 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CDX1P47902 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC12.82□□□□□ -0.36
CDX1P47902 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC12.82□□□□□ -0.36
CDX1P47902 RBPMS2P1-201ENST00000437762 623 ntBASIC12.82□□□□□ -0.36
CDX1P47902 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC12.82□□□□□ -0.36
CDX1P47902 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC12.82□□□□□ -0.36
CDX1P47902 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC12.82□□□□□ -0.36
CDX1P47902 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.82□□□□□ -0.36
CDX1P47902 AC109322.1-201ENST00000524499 1264 ntBASIC12.82□□□□□ -0.36
CDX1P47902 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC12.82□□□□□ -0.36
CDX1P47902 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.82□□□□□ -0.36
CDX1P47902 AC020765.3-201ENST00000613051 740 ntBASIC12.82□□□□□ -0.36
CDX1P47902 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
CDX1P47902 AC093028.1-201ENST00000622998 982 ntBASIC12.82□□□□□ -0.36
CDX1P47902 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.82□□□□□ -0.36
CDX1P47902 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC12.82□□□□□ -0.36
CDX1P47902 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC12.82□□□□□ -0.36
CDX1P47902 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC12.82□□□□□ -0.36
CDX1P47902 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CDX1P47902 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CDX1P47902 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 CICP17-201ENST00000418553 2377 ntBASIC12.81□□□□□ -0.36
CDX1P47902 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms