Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.37■□□□□ 0.21
BDNFP23560 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.37■□□□□ 0.21
BDNFP23560 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.37■□□□□ 0.21
BDNFP23560 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
BDNFP23560 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.37■□□□□ 0.21
BDNFP23560 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 ACA64.2-201ENST00000459014 129 ntBASIC16.37■□□□□ 0.21
BDNFP23560 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.37■□□□□ 0.21
BDNFP23560 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
BDNFP23560 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 PTP4A1P2-201ENST00000546033 454 ntBASIC16.37■□□□□ 0.21
BDNFP23560 AP001063.1-201ENST00000568332 529 ntBASIC16.37■□□□□ 0.21
BDNFP23560 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.37■□□□□ 0.21
BDNFP23560 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.37■□□□□ 0.21
BDNFP23560 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.37■□□□□ 0.21
BDNFP23560 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.37■□□□□ 0.21
BDNFP23560 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.37■□□□□ 0.21
BDNFP23560 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
BDNFP23560 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
BDNFP23560 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.37■□□□□ 0.21
BDNFP23560 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.37■□□□□ 0.21
BDNFP23560 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BDNFP23560 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.36■□□□□ 0.21
BDNFP23560 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
BDNFP23560 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
BDNFP23560 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
BDNFP23560 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.36■□□□□ 0.21
BDNFP23560 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.36■□□□□ 0.21
BDNFP23560 AC244107.1-201ENST00000442033 332 ntBASIC16.36■□□□□ 0.21
BDNFP23560 ATP5G2P4-201ENST00000442175 420 ntBASIC16.36■□□□□ 0.21
BDNFP23560 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.36■□□□□ 0.21
BDNFP23560 CROCCP4-201ENST00000457096 498 ntBASIC16.36■□□□□ 0.21
BDNFP23560 AC093433.1-201ENST00000458048 571 ntBASIC16.36■□□□□ 0.21
BDNFP23560 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.36■□□□□ 0.21
BDNFP23560 IGHV3-71-201ENST00000523324 359 ntBASIC16.36■□□□□ 0.21
BDNFP23560 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.36■□□□□ 0.21
BDNFP23560 AC068587.3-201ENST00000526613 355 ntBASIC16.36■□□□□ 0.21
BDNFP23560 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
BDNFP23560 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.36■□□□□ 0.21
BDNFP23560 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
BDNFP23560 AC233724.13-201ENST00000598383 410 ntBASIC16.36■□□□□ 0.21
BDNFP23560 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.36■□□□□ 0.21
BDNFP23560 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
BDNFP23560 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
BDNFP23560 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
BDNFP23560 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 AC018665.1-201ENST00000622927 1362 ntBASIC16.36■□□□□ 0.21
BDNFP23560 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
BDNFP23560 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.36■□□□□ 0.21
BDNFP23560 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BDNFP23560 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.36■□□□□ 0.21
BDNFP23560 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.36■□□□□ 0.21
BDNFP23560 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms