Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.227e-8■□□□□ 10.2
YBX3P16989 LARS-214ENST00000512412 575 ntTSL 510.59□□□□□ -0.717e-8■□□□□ 10.2
YBX3P16989 LARS-215ENST00000514104 509 ntTSL 28.3□□□□□ -1.087e-8■□□□□ 10.2
YBX3P16989 HSF1-213ENST00000534314 684 ntTSL 217.61■□□□□ 0.412e-6■□□□□ 10.2
YBX3P16989 NLN-208ENST00000511299 1658 ntTSL 516.24■□□□□ 0.192e-6■□□□□ 10.2
YBX3P16989 NLN-205ENST00000506799 2085 ntTSL 514.34□□□□□ -0.112e-6■□□□□ 10.2
YBX3P16989 NLN-201ENST00000380985 8661 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.782e-6■□□□□ 10.2
YBX3P16989 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.14□□□□□ -1.432e-6■□□□□ 10.2
YBX3P16989 EIF2D-202ENST00000367114 1633 ntTSL 1 (best) BASIC14.57□□□□□ -0.086e-7■□□□□ 10.2
YBX3P16989 EIF2D-201ENST00000271764 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.396e-7■□□□□ 10.2
YBX3P16989 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.62e-6■□□□□ 10.2
YBX3P16989 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.12e-6■□□□□ 10.2
YBX3P16989 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.272e-6■□□□□ 10.2
YBX3P16989 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.272e-6■□□□□ 10.2
YBX3P16989 AGPAT3-203ENST00000398058 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.442e-6■□□□□ 10.2
YBX3P16989 BUB1-210ENST00000478175 759 ntTSL 57.78□□□□□ -1.161e-11■□□□□ 10.2
YBX3P16989 RPL38-205ENST00000530646 2450 ntTSL 1 (best)18.44■□□□□ 0.544e-34■□□□□ 10.2
YBX3P16989 RPL38-203ENST00000528433 169 ntTSL 516.69■□□□□ 0.264e-34■□□□□ 10.2
YBX3P16989 RPL38-204ENST00000529123 576 ntTSL 214.87□□□□□ -0.034e-34■□□□□ 10.2
YBX3P16989 FAXDC2-215ENST00000524250 3105 ntTSL 211.06□□□□□ -0.642e-6■□□□□ 10.2
YBX3P16989 COPG1-208ENST00000513965 730 ntTSL 215.87■□□□□ 0.131e-6■□□□□ 10.2
YBX3P16989 EIF2A-210ENST00000474505 1010 ntTSL 29.16□□□□□ -0.943e-10■□□□□ 10.2
YBX3P16989 EIF2A-215ENST00000490505 568 ntTSL 55.69□□□□□ -1.53e-10■□□□□ 10.2
YBX3P16989 GNB2-212ENST00000470354 902 ntTSL 525.96■■□□□ 1.752e-8■□□□□ 10.2
YBX3P16989 HDDC2-206ENST00000608461 587 ntTSL 218.38■□□□□ 0.533e-9■□□□□ 10.2
YBX3P16989 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.34■□□□□ 0.218e-16■□□□□ 10.2
YBX3P16989 WARS-201ENST00000344102 2690 ntTSL 5 BASIC11.9□□□□□ -0.58e-16■□□□□ 10.2
YBX3P16989 WARS-202ENST00000355338 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.578e-16■□□□□ 10.2
YBX3P16989 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.898e-16■□□□□ 10.2
YBX3P16989 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.618e-10■□□□□ 10.2
YBX3P16989 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.198e-10■□□□□ 10.2
YBX3P16989 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC20.03■□□□□ 0.88e-10■□□□□ 10.2
YBX3P16989 NDUFS8-202ENST00000432321 936 ntTSL 220.15■□□□□ 0.823e-12■□□□□ 10.2
YBX3P16989 NDUFS8-203ENST00000453471 620 ntTSL 319.55■□□□□ 0.723e-12■□□□□ 10.2
YBX3P16989 NDUFS8-211ENST00000529645 606 ntTSL 317.99■□□□□ 0.473e-12■□□□□ 10.2
YBX3P16989 NDUFS8-215ENST00000532399 3072 ntTSL 214.64□□□□□ -0.073e-12■□□□□ 10.2
YBX3P16989 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC19.73■□□□□ 0.753e-9■□□□□ 10.2
YBX3P16989 NDUFA7-204ENST00000601101 414 ntTSL 419.71■□□□□ 0.753e-9■□□□□ 10.2
YBX3P16989 NDUFA7-202ENST00000593729 569 ntTSL 219.06■□□□□ 0.643e-9■□□□□ 10.2
YBX3P16989 NDUFA7-201ENST00000301457 601 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.023e-9■□□□□ 10.2
YBX3P16989 NDUFA7-203ENST00000595856 553 ntTSL 514.78□□□□□ -0.043e-9■□□□□ 10.2
YBX3P16989 ARHGEF2-217ENST00000497907 764 ntTSL 326.08■■□□□ 1.778e-9■□□□□ 10.2
YBX3P16989 ARHGEF2-213ENST00000476273 668 ntTSL 318.79■□□□□ 0.68e-9■□□□□ 10.2
YBX3P16989 ARHGEF2-220ENST00000609707 692 ntTSL 213.39□□□□□ -0.278e-9■□□□□ 10.2
YBX3P16989 NELFE-210ENST00000491139 582 ntTSL 329.33■■■□□ 2.297e-7■□□□□ 10.2
YBX3P16989 NELFE-212ENST00000492539 583 ntTSL 327.49■■□□□ 1.997e-7■□□□□ 10.2
YBX3P16989 NELFE-204ENST00000436289 906 ntTSL 521.55■■□□□ 1.047e-7■□□□□ 10.2
YBX3P16989 NELFE-203ENST00000426722 765 ntTSL 517.69■□□□□ 0.427e-7■□□□□ 10.2
YBX3P16989 NELFE-213ENST00000494956 568 ntTSL 314.22□□□□□ -0.137e-7■□□□□ 10.2
YBX3P16989 ATRAID-204ENST00000472515 561 ntTSL 26.12□□□□□ -1.436e-11■□□□□ 10.2
YBX3P16989 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.641e-6■□□□□ 10.2
YBX3P16989 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.672e-7■□□□□ 10.2
YBX3P16989 CD63-211ENST00000551173 788 ntTSL 328.54■■■□□ 2.162e-7■□□□□ 10.2
YBX3P16989 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.122e-7■□□□□ 10.2
YBX3P16989 CD63-213ENST00000552164 845 ntTSL 227■■□□□ 1.912e-7■□□□□ 10.2
YBX3P16989 CD63-204ENST00000546939 779 ntTSL 3 BASIC23.16■■□□□ 1.32e-7■□□□□ 10.2
YBX3P16989 CD63-210ENST00000550776 870 ntTSL 5 BASIC22.01■■□□□ 1.112e-7■□□□□ 10.2
YBX3P16989 CD63-209ENST00000550050 829 ntTSL 521.66■■□□□ 1.062e-7■□□□□ 10.2
YBX3P16989 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.972e-7■□□□□ 10.2
YBX3P16989 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.592e-7■□□□□ 10.2
YBX3P16989 CD63-212ENST00000552067 621 ntTSL 5 BASIC16.12■□□□□ 0.172e-7■□□□□ 10.2
YBX3P16989 CD63-215ENST00000552754 682 ntTSL 1 (best) BASIC15.22■□□□□ 0.032e-7■□□□□ 10.2
YBX3P16989 CD63-207ENST00000548898 727 ntTSL 2 BASIC15.02■□□□□ -02e-7■□□□□ 10.2
YBX3P16989 CD63-206ENST00000548160 648 ntTSL 2 BASIC13.44□□□□□ -0.262e-7■□□□□ 10.2
YBX3P16989 SND1-208ENST00000470463 530 ntTSL 412.91□□□□□ -0.348e-25■□□□□ 10.2
YBX3P16989 PCBP2-216ENST00000550192 734 ntTSL 49.01□□□□□ -0.974e-24■□□□□ 10.2
YBX3P16989 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.047e-7■□□□□ 10.2
YBX3P16989 MICAL2-201ENST00000256194 3906 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.463e-6■□□□□ 10.2
YBX3P16989 MICAL2-218ENST00000528931 2868 ntTSL 1 (best)11.62□□□□□ -0.553e-6■□□□□ 10.2
YBX3P16989 MICAL2-231ENST00000537344 3774 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.613e-6■□□□□ 10.2
YBX3P16989 MICAL2-203ENST00000379612 6625 ntTSL 1 (best) BASIC10.82□□□□□ -0.683e-6■□□□□ 10.2
YBX3P16989 MICAL2-217ENST00000527546 3358 ntTSL 5 BASIC10.59□□□□□ -0.713e-6■□□□□ 10.2
YBX3P16989 MICAL2-202ENST00000342902 3711 ntAPPRIS ALT2 TSL 2 BASIC8.91□□□□□ -0.983e-6■□□□□ 10.2
YBX3P16989 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC14.04□□□□□ -0.163e-10■□□□□ 10.2
YBX3P16989 YY1-202ENST00000553625 422 ntTSL 221.88■■□□□ 1.092e-6■□□□□ 10.2
YBX3P16989 YY1-205ENST00000554804 1114 ntTSL 38.91□□□□□ -0.982e-6■□□□□ 10.2
YBX3P16989 ARL4A-206ENST00000439721 845 ntTSL 1 (best)21.73■■□□□ 1.072e-12■□□□□ 10.2
YBX3P16989 ARL4A-202ENST00000396662 1296 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.042e-12■□□□□ 10.2
YBX3P16989 ARL4A-203ENST00000396663 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.312e-12■□□□□ 10.2
YBX3P16989 ARL4A-201ENST00000356797 1147 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.742e-12■□□□□ 10.2
YBX3P16989 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.112e-12■□□□□ 10.2
YBX3P16989 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.52e-12■□□□□ 10.2
YBX3P16989 REXO2-208ENST00000539754 791 ntTSL 2 BASIC26.07■■□□□ 1.761e-7■□□□□ 10.2
YBX3P16989 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.162e-6■□□□□ 10.2
YBX3P16989 CENPV-203ENST00000476243 1770 ntTSL 525.76■■□□□ 1.712e-6■□□□□ 10.2
YBX3P16989 CENPV-202ENST00000472570 554 ntTSL 211.23□□□□□ -0.612e-6■□□□□ 10.2
YBX3P16989 UQCC2-202ENST00000374231 509 ntTSL 319.16■□□□□ 0.664e-7■□□□□ 10.2
YBX3P16989 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC18.24■□□□□ 0.514e-7■□□□□ 10.2
YBX3P16989 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.464e-7■□□□□ 10.2
YBX3P16989 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC28.7■■■□□ 2.187e-8■□□□□ 10.2
YBX3P16989 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.817e-8■□□□□ 10.2
YBX3P16989 TMEM230-209ENST00000492419 1730 ntTSL 324.81■■□□□ 1.567e-8■□□□□ 10.2
YBX3P16989 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.437e-8■□□□□ 10.2
YBX3P16989 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.437e-8■□□□□ 10.2
YBX3P16989 TMEM230-208ENST00000379299 1642 ntAPPRIS P1 TSL 1 (best)23.21■■□□□ 1.317e-8■□□□□ 10.2
YBX3P16989 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.317e-8■□□□□ 10.2
YBX3P16989 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC16.84■□□□□ 0.297e-8■□□□□ 10.2
YBX3P16989 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.3■□□□□ 0.27e-8■□□□□ 10.2
YBX3P16989 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.087e-8■□□□□ 10.2
YBX3P16989 NDUFV1-220ENST00000531250 736 ntTSL 224.71■■□□□ 1.554e-15■□□□□ 10.2
Retrieved 100 of 29,075 protein–RNA pairs in 220.4 ms