Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.31■□□□□ 0.2
RB1P06400 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.31■□□□□ 0.2
RB1P06400 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RB1P06400 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
RB1P06400 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RB1P06400 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RB1P06400 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RB1P06400 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.31■□□□□ 0.2
RB1P06400 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.31■□□□□ 0.2
RB1P06400 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
RB1P06400 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.3■□□□□ 0.2
RB1P06400 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.3■□□□□ 0.2
RB1P06400 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
RB1P06400 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
RB1P06400 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RB1P06400 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.3■□□□□ 0.2
RB1P06400 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RB1P06400 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.3■□□□□ 0.2
RB1P06400 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.3■□□□□ 0.2
RB1P06400 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.3■□□□□ 0.2
RB1P06400 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 AC106794.1-201ENST00000506935 792 ntBASIC16.3■□□□□ 0.2
RB1P06400 FGFR3P5-201ENST00000564496 886 ntBASIC16.3■□□□□ 0.2
RB1P06400 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
RB1P06400 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 AC022748.3-201ENST00000621828 275 ntBASIC16.3■□□□□ 0.2
RB1P06400 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
RB1P06400 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.3■□□□□ 0.2
RB1P06400 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.3■□□□□ 0.2
RB1P06400 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RB1P06400 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.3■□□□□ 0.2
RB1P06400 NKILA-202ENST00000614771 2598 ntBASIC16.3■□□□□ 0.2
RB1P06400 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 AC091046.1-201ENST00000331871 207 ntBASIC16.29■□□□□ 0.2
RB1P06400 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 AC104457.1-201ENST00000401024 814 ntBASIC16.29■□□□□ 0.2
RB1P06400 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.29■□□□□ 0.2
RB1P06400 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.29■□□□□ 0.2
RB1P06400 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.29■□□□□ 0.2
RB1P06400 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC16.29■□□□□ 0.2
RB1P06400 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.29■□□□□ 0.2
RB1P06400 AC024681.1-201ENST00000521917 487 ntBASIC16.29■□□□□ 0.2
RB1P06400 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.29■□□□□ 0.2
RB1P06400 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.29■□□□□ 0.2
RB1P06400 AL161670.2-201ENST00000557650 1227 ntBASIC16.29■□□□□ 0.2
RB1P06400 AC106820.3-201ENST00000561653 397 ntBASIC16.29■□□□□ 0.2
RB1P06400 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.29■□□□□ 0.2
RB1P06400 U62317.3-201ENST00000608319 855 ntBASIC16.29■□□□□ 0.2
RB1P06400 AC079336.7-201ENST00000623428 1078 ntBASIC16.29■□□□□ 0.2
RB1P06400 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
RB1P06400 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
RB1P06400 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RB1P06400 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RB1P06400 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RB1P06400 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.28■□□□□ 0.2
RB1P06400 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RB1P06400 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RB1P06400 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RB1P06400 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RB1P06400 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RB1P06400 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RB1P06400 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
RB1P06400 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
RB1P06400 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms