Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMCH1Q9UPQ0 AC007292.2-201ENST00000593524 1812 ntBASIC18.37■□□□□ 0.53
LIMCH1Q9UPQ0 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC18.37■□□□□ 0.53
LIMCH1Q9UPQ0 AC068587.6-202ENST00000641839 5619 ntBASIC18.37■□□□□ 0.53
LIMCH1Q9UPQ0 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMCH1Q9UPQ0 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMCH1Q9UPQ0 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMCH1Q9UPQ0 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMCH1Q9UPQ0 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMCH1Q9UPQ0 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 GHSR-202ENST00000427970 912 ntBASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 AP006288.1-201ENST00000446065 395 ntBASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 AL390755.1-201ENST00000623716 2027 ntBASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 AL136379.1-201ENST00000623471 2642 ntBASIC18.36■□□□□ 0.53
LIMCH1Q9UPQ0 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 RPL13P2-201ENST00000440687 659 ntBASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 AC027612.4-201ENST00000605371 583 ntBASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 AF228730.6-201ENST00000641497 218 ntBASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 AC084121.3-201ENST00000641716 218 ntBASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 ACE3P-201ENST00000423435 1973 ntBASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMCH1Q9UPQ0 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms