Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC29.26■■■□□ 2.28
SHROOM4Q9ULL8 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.28
SHROOM4Q9ULL8 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
SHROOM4Q9ULL8 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 SNX21-203ENST00000372541 771 ntTSL 2 BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 IQSEC3P1-201ENST00000538799 536 ntBASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 MIR6756-201ENST00000616240 63 ntBASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SHROOM4Q9ULL8 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 RNU1-114P-201ENST00000365297 166 ntBASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 AC024681.1-201ENST00000521917 487 ntBASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC29.25■■■□□ 2.27
SHROOM4Q9ULL8 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 AC114501.1-201ENST00000445949 172 ntBASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SHROOM4Q9ULL8 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 AL133466.1-201ENST00000447582 150 ntBASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 COX5BP1-201ENST00000507622 393 ntBASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 MIR4750-201ENST00000584564 56 ntBASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 AC092127.1-201ENST00000567093 3455 ntBASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM4Q9ULL8 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC29.22■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms