Protein–RNA interactions for Protein: Q9P0J7

KCMF1, E3 ubiquitin-protein ligase KCMF1, humanhuman

Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCMF1Q9P0J7 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 DOC2GP-202ENST00000514950 1163 ntBASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 AC015910.1-201ENST00000579400 975 ntBASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 AC022532.1-201ENST00000624563 1728 ntBASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
KCMF1Q9P0J7 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 GNAQP1-201ENST00000444815 1067 ntBASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 COX20P2-201ENST00000452636 358 ntBASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 AC023310.3-201ENST00000557027 670 ntBASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 AC100756.1-201ENST00000562736 682 ntBASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 AC138749.3-201ENST00000567691 622 ntBASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 AC116165.1-201ENST00000611806 668 ntBASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 AC009118.2-201ENST00000613275 655 ntBASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 PPT1-215ENST00000641471 2368 ntBASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.78□□□□□ -0.04
KCMF1Q9P0J7 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 AC099063.4-201ENST00000641099 1602 ntBASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 AC112693.3-201ENST00000624819 1983 ntBASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
KCMF1Q9P0J7 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
KCMF1Q9P0J7 SPDYE19P-201ENST00000338590 713 ntBASIC14.77□□□□□ -0.05
KCMF1Q9P0J7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
KCMF1Q9P0J7 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
KCMF1Q9P0J7 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.77□□□□□ -0.05
KCMF1Q9P0J7 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.77□□□□□ -0.05
KCMF1Q9P0J7 KRT18P43-201ENST00000469825 1281 ntBASIC14.77□□□□□ -0.05
KCMF1Q9P0J7 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms