Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC008494.3-201ENST00000606615 944 ntBASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 AC005702.4-201ENST00000618393 416 ntBASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 AC025048.6-201ENST00000634326 1161 ntBASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 TSPY26P-202ENST00000565928 3884 ntBASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 AC006058.4-201ENST00000624016 1670 ntBASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4CQ96CF2 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 DGCR5-201ENST00000399539 862 ntBASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 RN7SL692P-201ENST00000464677 288 ntBASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 AC012645.4-201ENST00000610691 1061 ntBASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP4CQ96CF2 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 TCAF2P1-201ENST00000291129 2421 ntBASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 AC114501.2-201ENST00000439631 535 ntBASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 TPRX2P-201ENST00000535362 881 ntBASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 SPDYE22P-201ENST00000582158 798 ntBASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4CQ96CF2 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms