Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.96□□□□□ -0.02
MSX2P35548 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
MSX2P35548 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
MSX2P35548 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
MSX2P35548 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.96□□□□□ -0.02
MSX2P35548 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
MSX2P35548 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
MSX2P35548 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 MED22-202ENST00000371999 987 ntTSL 3 BASIC14.95□□□□□ -0.02
MSX2P35548 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.95□□□□□ -0.02
MSX2P35548 RNF146-204ENST00000476956 884 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.95□□□□□ -0.02
MSX2P35548 AC073648.2-201ENST00000510116 352 ntBASIC14.95□□□□□ -0.02
MSX2P35548 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 AC109635.5-201ENST00000533593 962 ntBASIC14.95□□□□□ -0.02
MSX2P35548 TPM1-226ENST00000560959 925 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
MSX2P35548 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX2P35548 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSX2P35548 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
MSX2P35548 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.94□□□□□ -0.02
MSX2P35548 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.94□□□□□ -0.02
MSX2P35548 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 AC018529.2-202ENST00000611482 3087 ntBASIC14.94□□□□□ -0.02
MSX2P35548 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 IGLL3P-201ENST00000412472 434 ntBASIC14.94□□□□□ -0.02
MSX2P35548 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.94□□□□□ -0.02
MSX2P35548 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.94□□□□□ -0.02
MSX2P35548 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 AC117500.6-201ENST00000624871 588 ntBASIC14.94□□□□□ -0.02
MSX2P35548 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.94□□□□□ -0.02
MSX2P35548 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
MSX2P35548 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
MSX2P35548 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
MSX2P35548 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms