Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.85■□□□□ 0.45
USP28Q96RU2 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
USP28Q96RU2 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.85■□□□□ 0.45
USP28Q96RU2 AC109322.1-201ENST00000524499 1264 ntBASIC17.85■□□□□ 0.45
USP28Q96RU2 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.85■□□□□ 0.45
USP28Q96RU2 AC069262.1-201ENST00000539058 672 ntBASIC17.85■□□□□ 0.45
USP28Q96RU2 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USP28Q96RU2 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.85■□□□□ 0.45
USP28Q96RU2 AC092865.5-201ENST00000545435 363 ntBASIC17.85■□□□□ 0.45
USP28Q96RU2 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
USP28Q96RU2 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USP28Q96RU2 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.85■□□□□ 0.45
USP28Q96RU2 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.85■□□□□ 0.45
USP28Q96RU2 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.85■□□□□ 0.45
USP28Q96RU2 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
USP28Q96RU2 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.85■□□□□ 0.45
USP28Q96RU2 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
USP28Q96RU2 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.85■□□□□ 0.45
USP28Q96RU2 MIR6069-201ENST00000620069 79 ntBASIC17.85■□□□□ 0.45
USP28Q96RU2 LINC00628-201ENST00000628516 1289 ntBASIC17.85■□□□□ 0.45
USP28Q96RU2 AF228730.6-201ENST00000641497 218 ntBASIC17.85■□□□□ 0.45
USP28Q96RU2 AC084121.3-201ENST00000641716 218 ntBASIC17.85■□□□□ 0.45
USP28Q96RU2 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
USP28Q96RU2 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.85■□□□□ 0.45
USP28Q96RU2 AL009178.2-201ENST00000597278 2719 ntBASIC17.85■□□□□ 0.45
USP28Q96RU2 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.84■□□□□ 0.45
USP28Q96RU2 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.84■□□□□ 0.45
USP28Q96RU2 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 ACE3P-201ENST00000423435 1973 ntBASIC17.84■□□□□ 0.45
USP28Q96RU2 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.84■□□□□ 0.45
USP28Q96RU2 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.84■□□□□ 0.45
USP28Q96RU2 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC17.84■□□□□ 0.45
USP28Q96RU2 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
USP28Q96RU2 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
USP28Q96RU2 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.84■□□□□ 0.45
USP28Q96RU2 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.84■□□□□ 0.45
USP28Q96RU2 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.84■□□□□ 0.45
USP28Q96RU2 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.84■□□□□ 0.45
USP28Q96RU2 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 AC015910.1-201ENST00000579400 975 ntBASIC17.84■□□□□ 0.45
USP28Q96RU2 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
USP28Q96RU2 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.84■□□□□ 0.45
USP28Q96RU2 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 AC134684.3-201ENST00000641758 218 ntBASIC17.84■□□□□ 0.45
USP28Q96RU2 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 AP000845.1-201ENST00000581677 2131 ntBASIC17.84■□□□□ 0.45
USP28Q96RU2 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.84■□□□□ 0.45
USP28Q96RU2 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 NORAD-201ENST00000565493 5339 ntBASIC17.84■□□□□ 0.45
USP28Q96RU2 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.84■□□□□ 0.45
USP28Q96RU2 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP28Q96RU2 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.83■□□□□ 0.45
USP28Q96RU2 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
USP28Q96RU2 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP28Q96RU2 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.83■□□□□ 0.45
USP28Q96RU2 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
USP28Q96RU2 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.83■□□□□ 0.45
USP28Q96RU2 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP28Q96RU2 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP28Q96RU2 AL390755.1-201ENST00000623716 2027 ntBASIC17.83■□□□□ 0.45
USP28Q96RU2 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
USP28Q96RU2 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
USP28Q96RU2 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.83■□□□□ 0.44
USP28Q96RU2 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.83■□□□□ 0.44
USP28Q96RU2 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.83■□□□□ 0.44
USP28Q96RU2 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.83■□□□□ 0.44
USP28Q96RU2 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms