Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 SAMD11P1-201ENST00000571429 661 ntBASIC20.81■□□□□ 0.92
NPHP3Q7Z494 AL132994.2-201ENST00000603120 687 ntBASIC20.81■□□□□ 0.92
NPHP3Q7Z494 AL358472.3-201ENST00000608147 415 ntBASIC20.81■□□□□ 0.92
NPHP3Q7Z494 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 AC055811.4-201ENST00000624039 1754 ntBASIC20.81■□□□□ 0.92
NPHP3Q7Z494 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP3Q7Z494 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 HNRNPA1P41-201ENST00000397777 928 ntBASIC20.8■□□□□ 0.92
NPHP3Q7Z494 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 AL627389.1-201ENST00000413508 1182 ntBASIC20.8■□□□□ 0.92
NPHP3Q7Z494 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 AC100827.2-201ENST00000563214 1194 ntBASIC20.8■□□□□ 0.92
NPHP3Q7Z494 SNORD3B-2-202ENST00000571722 791 ntBASIC20.8■□□□□ 0.92
NPHP3Q7Z494 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP3Q7Z494 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 NEU3-205ENST00000531619 582 ntTSL 5 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 MIR4683-201ENST00000579659 81 ntBASIC20.79■□□□□ 0.92
NPHP3Q7Z494 AC004466.1-201ENST00000599515 1080 ntBASIC20.79■□□□□ 0.92
NPHP3Q7Z494 WT1-AS_6.1-201ENST00000614919 121 ntBASIC20.79■□□□□ 0.92
NPHP3Q7Z494 AL136301.1-201ENST00000615830 422 ntBASIC20.79■□□□□ 0.92
NPHP3Q7Z494 NAP1L6-202ENST00000641404 1222 ntBASIC20.79■□□□□ 0.92
NPHP3Q7Z494 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 AC012313.1-201ENST00000593393 3059 ntBASIC20.79■□□□□ 0.92
NPHP3Q7Z494 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP3Q7Z494 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 DNAJB1P1-201ENST00000429417 1024 ntBASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 RPL13AP19-201ENST00000434320 584 ntBASIC20.78■□□□□ 0.92
NPHP3Q7Z494 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 RCC2P8-201ENST00000502779 1035 ntBASIC20.78■□□□□ 0.92
NPHP3Q7Z494 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 IRF3-215ENST00000596822 823 ntTSL 3 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AC087045.2-201ENST00000606279 1003 ntBASIC20.78■□□□□ 0.92
NPHP3Q7Z494 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms