Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP54Q70EL1 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USP54Q70EL1 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP54Q70EL1 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP54Q70EL1 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP54Q70EL1 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP54Q70EL1 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP54Q70EL1 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
USP54Q70EL1 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP54Q70EL1 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
USP54Q70EL1 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
USP54Q70EL1 MPV17-204ENST00000399052 749 ntTSL 4 BASIC20.21■□□□□ 0.83
USP54Q70EL1 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC20.21■□□□□ 0.83
USP54Q70EL1 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC20.21■□□□□ 0.83
USP54Q70EL1 AC234782.1-201ENST00000451950 919 ntBASIC20.21■□□□□ 0.83
USP54Q70EL1 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
USP54Q70EL1 VPS18-202ENST00000558474 873 ntTSL 3 BASIC20.21■□□□□ 0.83
USP54Q70EL1 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC20.21■□□□□ 0.83
USP54Q70EL1 MIR3907-201ENST00000579424 151 ntBASIC20.21■□□□□ 0.83
USP54Q70EL1 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC20.21■□□□□ 0.83
USP54Q70EL1 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC20.21■□□□□ 0.83
USP54Q70EL1 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC20.21■□□□□ 0.83
USP54Q70EL1 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP54Q70EL1 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC20.21■□□□□ 0.83
USP54Q70EL1 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC20.21■□□□□ 0.83
USP54Q70EL1 AL118508.1-201ENST00000613502 2345 ntBASIC20.21■□□□□ 0.83
USP54Q70EL1 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP54Q70EL1 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC20.21■□□□□ 0.83
USP54Q70EL1 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
USP54Q70EL1 AP000845.1-201ENST00000581677 2131 ntBASIC20.21■□□□□ 0.83
USP54Q70EL1 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.2■□□□□ 0.82
USP54Q70EL1 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP54Q70EL1 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.2■□□□□ 0.82
USP54Q70EL1 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP54Q70EL1 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC20.2■□□□□ 0.82
USP54Q70EL1 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP54Q70EL1 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP54Q70EL1 AC078875.1-201ENST00000431907 724 ntBASIC20.2■□□□□ 0.82
USP54Q70EL1 EEF1DP6-201ENST00000449232 372 ntBASIC20.2■□□□□ 0.82
USP54Q70EL1 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP54Q70EL1 AC131206.1-201ENST00000538078 1211 ntBASIC20.2■□□□□ 0.82
USP54Q70EL1 MIR4706-201ENST00000582134 82 ntBASIC20.2■□□□□ 0.82
USP54Q70EL1 NAT9-224ENST00000583757 583 ntTSL 3 BASIC20.2■□□□□ 0.82
USP54Q70EL1 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC20.2■□□□□ 0.82
USP54Q70EL1 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC20.2■□□□□ 0.82
USP54Q70EL1 AL136295.7-201ENST00000619226 1200 ntBASIC20.2■□□□□ 0.82
USP54Q70EL1 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20.2■□□□□ 0.82
USP54Q70EL1 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP54Q70EL1 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP54Q70EL1 MROH4P-201ENST00000431302 1578 ntBASIC20.2■□□□□ 0.82
USP54Q70EL1 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC20.2■□□□□ 0.82
USP54Q70EL1 CICP11-201ENST00000434745 2827 ntBASIC20.2■□□□□ 0.82
USP54Q70EL1 MBLAC2-202ENST00000514906 1936 ntBASIC20.2■□□□□ 0.82
USP54Q70EL1 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP54Q70EL1 AC023090.2-201ENST00000625182 2110 ntBASIC20.2■□□□□ 0.82
USP54Q70EL1 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
USP54Q70EL1 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 AL353637.1-201ENST00000451571 732 ntBASIC20.19■□□□□ 0.82
USP54Q70EL1 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC20.19■□□□□ 0.82
USP54Q70EL1 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC20.19■□□□□ 0.82
USP54Q70EL1 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC20.19■□□□□ 0.82
USP54Q70EL1 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC20.19■□□□□ 0.82
USP54Q70EL1 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 LILRP1-201ENST00000444199 1370 ntBASIC20.19■□□□□ 0.82
USP54Q70EL1 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
USP54Q70EL1 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 AC087481.3-201ENST00000602886 1894 ntBASIC20.19■□□□□ 0.82
USP54Q70EL1 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC20.19■□□□□ 0.82
USP54Q70EL1 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC20.19■□□□□ 0.82
USP54Q70EL1 FADS2-212ENST00000522639 360 ntTSL 5 BASIC20.19■□□□□ 0.82
USP54Q70EL1 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
USP54Q70EL1 PCDHB19P-201ENST00000570871 2371 ntBASIC20.19■□□□□ 0.82
USP54Q70EL1 FADS2-215ENST00000574708 385 ntTSL 3 BASIC20.19■□□□□ 0.82
USP54Q70EL1 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC20.19■□□□□ 0.82
USP54Q70EL1 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC20.19■□□□□ 0.82
USP54Q70EL1 SPCS2P2-201ENST00000603270 608 ntBASIC20.19■□□□□ 0.82
USP54Q70EL1 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC20.19■□□□□ 0.82
USP54Q70EL1 CU633904.3-201ENST00000624042 1029 ntBASIC20.19■□□□□ 0.82
USP54Q70EL1 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP54Q70EL1 AC004923.1-202ENST00000642106 209 ntBASIC20.19■□□□□ 0.82
USP54Q70EL1 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP54Q70EL1 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP54Q70EL1 CICP13-201ENST00000422015 2789 ntBASIC20.18■□□□□ 0.82
USP54Q70EL1 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP54Q70EL1 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC20.18■□□□□ 0.82
USP54Q70EL1 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP54Q70EL1 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
USP54Q70EL1 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP54Q70EL1 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
USP54Q70EL1 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms