Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.65□□□□□ -0.38
CX3CL1P78423 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.65□□□□□ -0.38
CX3CL1P78423 PRR29-209ENST00000582540 967 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC12.65□□□□□ -0.38
CX3CL1P78423 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.65□□□□□ -0.38
CX3CL1P78423 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 IMPDH1P4-201ENST00000445028 1534 ntBASIC12.65□□□□□ -0.38
CX3CL1P78423 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.65□□□□□ -0.38
CX3CL1P78423 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CX3CL1P78423 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 KRT8P12-202ENST00000472924 1397 ntBASIC12.65□□□□□ -0.38
CX3CL1P78423 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 OR2I1P-209ENST00000641730 5365 ntBASIC12.65□□□□□ -0.38
CX3CL1P78423 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CX3CL1P78423 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CX3CL1P78423 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
CX3CL1P78423 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.65□□□□□ -0.39
CX3CL1P78423 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 SNX18-202ENST00000343017 3140 ntBASIC12.64□□□□□ -0.39
CX3CL1P78423 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.64□□□□□ -0.39
CX3CL1P78423 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 BAD-202ENST00000394531 631 ntTSL 3 BASIC12.64□□□□□ -0.39
CX3CL1P78423 FO393414.2-201ENST00000405153 598 ntBASIC12.64□□□□□ -0.39
CX3CL1P78423 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
CX3CL1P78423 AC107890.1-201ENST00000422478 521 ntBASIC12.64□□□□□ -0.39
CX3CL1P78423 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
CX3CL1P78423 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 BAD-207ENST00000544785 525 ntTSL 3 BASIC12.64□□□□□ -0.39
CX3CL1P78423 SUOX-214ENST00000551841 906 ntTSL 3 BASIC12.64□□□□□ -0.39
CX3CL1P78423 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 AC140878.1-201ENST00000565277 250 ntBASIC12.64□□□□□ -0.39
CX3CL1P78423 AC051619.7-201ENST00000568314 623 ntBASIC12.64□□□□□ -0.39
CX3CL1P78423 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 AC006486.2-201ENST00000624246 2199 ntBASIC12.64□□□□□ -0.39
CX3CL1P78423 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.64□□□□□ -0.39
CX3CL1P78423 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CX3CL1P78423 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CL1P78423 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.64□□□□□ -0.39
CX3CL1P78423 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CX3CL1P78423 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
CX3CL1P78423 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CL1P78423 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms