Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
MSX1P28360 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
MSX1P28360 AC017083.2-201ENST00000608069 979 ntBASIC14.33□□□□□ -0.12
MSX1P28360 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.33□□□□□ -0.12
MSX1P28360 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
MSX1P28360 AC006213.4-201ENST00000616184 634 ntBASIC14.33□□□□□ -0.12
MSX1P28360 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC14.33□□□□□ -0.12
MSX1P28360 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.33□□□□□ -0.12
MSX1P28360 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.33□□□□□ -0.12
MSX1P28360 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
MSX1P28360 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
MSX1P28360 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
MSX1P28360 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 AC067930.6-201ENST00000623257 4947 ntBASIC14.33□□□□□ -0.12
MSX1P28360 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX1P28360 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
MSX1P28360 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX1P28360 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
MSX1P28360 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.32□□□□□ -0.12
MSX1P28360 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
MSX1P28360 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
MSX1P28360 SPDYE19P-201ENST00000338590 713 ntBASIC14.32□□□□□ -0.12
MSX1P28360 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.32□□□□□ -0.12
MSX1P28360 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.32□□□□□ -0.12
MSX1P28360 MEP1AP4-201ENST00000423244 1087 ntBASIC14.32□□□□□ -0.12
MSX1P28360 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.32□□□□□ -0.12
MSX1P28360 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.32□□□□□ -0.12
MSX1P28360 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.32□□□□□ -0.12
MSX1P28360 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
MSX1P28360 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX1P28360 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.32□□□□□ -0.12
MSX1P28360 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX1P28360 SRD5A3P1-201ENST00000603021 949 ntBASIC14.32□□□□□ -0.12
MSX1P28360 LINC01115-203ENST00000606068 577 ntBASIC14.32□□□□□ -0.12
MSX1P28360 AL162274.1-201ENST00000617191 1098 ntBASIC14.32□□□□□ -0.12
MSX1P28360 PAX6-247ENST00000638965 979 ntTSL 5 BASIC14.32□□□□□ -0.12
MSX1P28360 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.32□□□□□ -0.12
MSX1P28360 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX1P28360 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX1P28360 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.32□□□□□ -0.12
MSX1P28360 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
MSX1P28360 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
MSX1P28360 AC127383.1-201ENST00000444697 1800 ntBASIC14.31□□□□□ -0.12
MSX1P28360 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
MSX1P28360 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
MSX1P28360 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.31□□□□□ -0.12
MSX1P28360 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms