Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.42■□□□□ 0.22
BDNFP23560 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 AC132872.4-202ENST00000622924 2756 ntBASIC16.42■□□□□ 0.22
BDNFP23560 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
BDNFP23560 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BDNFP23560 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 PAUPAR-201ENST00000630360 2965 ntBASIC16.41■□□□□ 0.22
BDNFP23560 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.41■□□□□ 0.22
BDNFP23560 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.41■□□□□ 0.22
BDNFP23560 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.41■□□□□ 0.22
BDNFP23560 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.41■□□□□ 0.22
BDNFP23560 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
BDNFP23560 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.41■□□□□ 0.22
BDNFP23560 AC112492.5-201ENST00000421897 457 ntBASIC16.41■□□□□ 0.22
BDNFP23560 ACTG1P3-201ENST00000431775 1114 ntBASIC16.41■□□□□ 0.22
BDNFP23560 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 GAPDHP40-201ENST00000505218 1006 ntBASIC16.41■□□□□ 0.22
BDNFP23560 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.41■□□□□ 0.22
BDNFP23560 KRT17P8-201ENST00000540749 863 ntBASIC16.41■□□□□ 0.22
BDNFP23560 HILS1-202ENST00000545329 423 ntBASIC16.41■□□□□ 0.22
BDNFP23560 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.41■□□□□ 0.22
BDNFP23560 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 MIR5189-201ENST00000577370 114 ntBASIC16.41■□□□□ 0.22
BDNFP23560 CLUHP6-201ENST00000580789 941 ntBASIC16.41■□□□□ 0.22
BDNFP23560 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 AC015936.2-201ENST00000593177 259 ntBASIC16.41■□□□□ 0.22
BDNFP23560 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.41■□□□□ 0.22
BDNFP23560 AL162274.1-201ENST00000617191 1098 ntBASIC16.41■□□□□ 0.22
BDNFP23560 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.41■□□□□ 0.22
BDNFP23560 AC005252.2-201ENST00000624630 1141 ntBASIC16.41■□□□□ 0.22
BDNFP23560 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.41■□□□□ 0.22
BDNFP23560 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.41■□□□□ 0.22
BDNFP23560 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.41■□□□□ 0.22
BDNFP23560 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.41■□□□□ 0.22
BDNFP23560 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.41■□□□□ 0.22
BDNFP23560 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.41■□□□□ 0.22
BDNFP23560 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
BDNFP23560 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BDNFP23560 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.4■□□□□ 0.22
BDNFP23560 AC022188.1-201ENST00000620960 1664 ntBASIC16.4■□□□□ 0.22
BDNFP23560 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.4■□□□□ 0.22
BDNFP23560 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.4■□□□□ 0.22
BDNFP23560 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.4■□□□□ 0.22
BDNFP23560 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 AC084364.1-201ENST00000551967 1556 ntBASIC16.4■□□□□ 0.22
BDNFP23560 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.4■□□□□ 0.22
BDNFP23560 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.4■□□□□ 0.22
BDNFP23560 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.4■□□□□ 0.22
BDNFP23560 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
BDNFP23560 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.4■□□□□ 0.22
BDNFP23560 GPR53P-205ENST00000457298 1084 ntBASIC16.4■□□□□ 0.22
BDNFP23560 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.4■□□□□ 0.22
BDNFP23560 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
BDNFP23560 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.4■□□□□ 0.22
BDNFP23560 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.4■□□□□ 0.22
BDNFP23560 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.4■□□□□ 0.22
BDNFP23560 AC093813.1-201ENST00000605066 256 ntBASIC16.4■□□□□ 0.22
BDNFP23560 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
BDNFP23560 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BDNFP23560 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms