Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
COL11A1P12107 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
COL11A1P12107 CHMP1AP1-201ENST00000445563 662 ntBASIC17.36■□□□□ 0.37
COL11A1P12107 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 AC026740.1-201ENST00000607068 791 ntBASIC17.36■□□□□ 0.37
COL11A1P12107 AC007663.3-201ENST00000609632 465 ntBASIC17.36■□□□□ 0.37
COL11A1P12107 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.36■□□□□ 0.37
COL11A1P12107 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
COL11A1P12107 AC011840.2-201ENST00000563063 1520 ntBASIC17.36■□□□□ 0.37
COL11A1P12107 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
COL11A1P12107 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.36■□□□□ 0.37
COL11A1P12107 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL11A1P12107 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.36■□□□□ 0.37
COL11A1P12107 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.35■□□□□ 0.37
COL11A1P12107 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.35■□□□□ 0.37
COL11A1P12107 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.35■□□□□ 0.37
COL11A1P12107 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.35■□□□□ 0.37
COL11A1P12107 RNMTL1P1-201ENST00000454103 560 ntBASIC17.35■□□□□ 0.37
COL11A1P12107 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.35■□□□□ 0.37
COL11A1P12107 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.35■□□□□ 0.37
COL11A1P12107 RNA5SP423-201ENST00000517127 109 ntBASIC17.35■□□□□ 0.37
COL11A1P12107 AC022616.1-201ENST00000518688 554 ntBASIC17.35■□□□□ 0.37
COL11A1P12107 AC126915.1-201ENST00000522847 1038 ntBASIC17.35■□□□□ 0.37
COL11A1P12107 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 AL645939.5-201ENST00000606834 243 ntBASIC17.35■□□□□ 0.37
COL11A1P12107 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.35■□□□□ 0.37
COL11A1P12107 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
COL11A1P12107 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.35■□□□□ 0.37
COL11A1P12107 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL11A1P12107 AC087481.3-201ENST00000602886 1894 ntBASIC17.35■□□□□ 0.37
COL11A1P12107 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
COL11A1P12107 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL11A1P12107 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.35■□□□□ 0.37
COL11A1P12107 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.35■□□□□ 0.37
COL11A1P12107 SPTLC1P5-201ENST00000450718 252 ntBASIC17.35■□□□□ 0.37
COL11A1P12107 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.35■□□□□ 0.37
COL11A1P12107 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.35■□□□□ 0.37
COL11A1P12107 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17.35■□□□□ 0.37
COL11A1P12107 AC132192.2-201ENST00000596206 1147 ntBASIC17.35■□□□□ 0.37
COL11A1P12107 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL11A1P12107 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL11A1P12107 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 FKBP4P6-201ENST00000457486 1332 ntBASIC17.34■□□□□ 0.37
COL11A1P12107 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.34■□□□□ 0.37
COL11A1P12107 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.34■□□□□ 0.37
COL11A1P12107 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.34■□□□□ 0.37
COL11A1P12107 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL11A1P12107 BX284668.4-201ENST00000453917 508 ntBASIC17.34■□□□□ 0.37
COL11A1P12107 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.34■□□□□ 0.37
COL11A1P12107 AL160314.3-201ENST00000556041 767 ntBASIC17.34■□□□□ 0.37
COL11A1P12107 MIR3619-201ENST00000579667 83 ntBASIC17.34■□□□□ 0.37
COL11A1P12107 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.34■□□□□ 0.37
COL11A1P12107 AC002472.3-201ENST00000640124 621 ntBASIC17.34■□□□□ 0.37
COL11A1P12107 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.34■□□□□ 0.37
COL11A1P12107 AL008718.2-201ENST00000609206 1313 ntBASIC17.34■□□□□ 0.37
COL11A1P12107 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.34■□□□□ 0.37
COL11A1P12107 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.34■□□□□ 0.37
COL11A1P12107 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.34■□□□□ 0.37
COL11A1P12107 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL11A1P12107 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL11A1P12107 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL11A1P12107 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL11A1P12107 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.33■□□□□ 0.37
COL11A1P12107 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL11A1P12107 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL11A1P12107 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL11A1P12107 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL11A1P12107 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.33■□□□□ 0.37
COL11A1P12107 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL11A1P12107 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.33■□□□□ 0.37
COL11A1P12107 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.33■□□□□ 0.37
COL11A1P12107 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.33■□□□□ 0.37
COL11A1P12107 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms