Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 RNU1-114P-201ENST00000365297 166 ntBASIC18.29■□□□□ 0.52
HLA-DOAP06340 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 CNN2P8-201ENST00000421872 913 ntBASIC18.29■□□□□ 0.52
HLA-DOAP06340 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 AC114812.1-204ENST00000449669 728 ntBASIC18.29■□□□□ 0.52
HLA-DOAP06340 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 AC004066.1-201ENST00000502488 802 ntBASIC18.29■□□□□ 0.52
HLA-DOAP06340 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 AHRR-211ENST00000515206 462 ntTSL 5 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 RN7SL219P-201ENST00000582872 296 ntBASIC18.29■□□□□ 0.52
HLA-DOAP06340 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 ACTBP8-201ENST00000403258 1108 ntBASIC18.28■□□□□ 0.52
HLA-DOAP06340 KLF2P2-201ENST00000416807 1039 ntBASIC18.28■□□□□ 0.52
HLA-DOAP06340 AC026954.1-201ENST00000429771 1293 ntBASIC18.28■□□□□ 0.52
HLA-DOAP06340 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 ACTBP11-201ENST00000436287 1126 ntBASIC18.28■□□□□ 0.52
HLA-DOAP06340 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 AC010328.2-201ENST00000597698 1111 ntBASIC18.28■□□□□ 0.52
HLA-DOAP06340 AC008687.7-202ENST00000637404 953 ntBASIC18.28■□□□□ 0.52
HLA-DOAP06340 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 PCDHB19P-201ENST00000570871 2371 ntBASIC18.28■□□□□ 0.52
HLA-DOAP06340 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC18.28■□□□□ 0.52
HLA-DOAP06340 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 AC022188.1-201ENST00000620960 1664 ntBASIC18.28■□□□□ 0.52
HLA-DOAP06340 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DOAP06340 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 BRWD1P1-201ENST00000401091 371 ntBASIC18.27■□□□□ 0.52
HLA-DOAP06340 FAM197Y7-201ENST00000432892 766 ntBASIC18.27■□□□□ 0.52
HLA-DOAP06340 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 AC023310.1-201ENST00000554836 735 ntBASIC18.27■□□□□ 0.52
HLA-DOAP06340 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms