Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
TNFP01375 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TNFP01375 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TNFP01375 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TNFP01375 AC093525.8-201ENST00000624099 1342 ntBASIC15.18■□□□□ 0.02
TNFP01375 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.18■□□□□ 0.02
TNFP01375 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.18■□□□□ 0.02
TNFP01375 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
TNFP01375 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TNFP01375 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 AC127383.1-201ENST00000444697 1800 ntBASIC15.18■□□□□ 0.02
TNFP01375 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TNFP01375 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
TNFP01375 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TNFP01375 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
TNFP01375 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.18■□□□□ 0.02
TNFP01375 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 NUS1P3-201ENST00000423502 862 ntBASIC15.18■□□□□ 0.02
TNFP01375 HLA-V-201ENST00000429037 534 ntBASIC15.18■□□□□ 0.02
TNFP01375 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 BNIP3P42-201ENST00000454982 569 ntBASIC15.18■□□□□ 0.02
TNFP01375 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.18■□□□□ 0.02
TNFP01375 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.18■□□□□ 0.02
TNFP01375 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.18■□□□□ 0.02
TNFP01375 BNIP3P29-201ENST00000598302 571 ntBASIC15.18■□□□□ 0.02
TNFP01375 AC011447.5-201ENST00000616168 564 ntBASIC15.18■□□□□ 0.02
TNFP01375 MIR6799-201ENST00000620297 69 ntBASIC15.18■□□□□ 0.02
TNFP01375 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TNFP01375 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.18■□□□□ 0.02
TNFP01375 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
TNFP01375 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.18■□□□□ 0.02
TNFP01375 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TNFP01375 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TNFP01375 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.17■□□□□ 0.02
TNFP01375 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.17■□□□□ 0.02
TNFP01375 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.17■□□□□ 0.02
TNFP01375 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
TNFP01375 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.17■□□□□ 0.02
TNFP01375 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.17■□□□□ 0.02
TNFP01375 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
TNFP01375 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.17■□□□□ 0.02
TNFP01375 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.17■□□□□ 0.02
TNFP01375 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.17■□□□□ 0.02
TNFP01375 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.17■□□□□ 0.02
TNFP01375 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.17■□□□□ 0.02
TNFP01375 AP000812.2-201ENST00000538934 718 ntBASIC15.17■□□□□ 0.02
TNFP01375 AC079316.1-201ENST00000548397 411 ntBASIC15.17■□□□□ 0.02
TNFP01375 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.17■□□□□ 0.02
TNFP01375 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.17■□□□□ 0.02
TNFP01375 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
TNFP01375 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.17■□□□□ 0.02
TNFP01375 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TNFP01375 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 KRT8P35-201ENST00000483942 1338 ntBASIC15.17■□□□□ 0.02
TNFP01375 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TNFP01375 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms