Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.39■□□□□ 0.05
VPS4BO75351 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS4BO75351 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.39■□□□□ 0.05
VPS4BO75351 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VPS4BO75351 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.39■□□□□ 0.05
VPS4BO75351 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS4BO75351 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS4BO75351 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.39■□□□□ 0.05
VPS4BO75351 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.39■□□□□ 0.05
VPS4BO75351 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.39■□□□□ 0.05
VPS4BO75351 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.39■□□□□ 0.05
VPS4BO75351 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.39■□□□□ 0.05
VPS4BO75351 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VPS4BO75351 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS4BO75351 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.39■□□□□ 0.05
VPS4BO75351 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
VPS4BO75351 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VPS4BO75351 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
VPS4BO75351 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.38■□□□□ 0.05
VPS4BO75351 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
VPS4BO75351 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
VPS4BO75351 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS4BO75351 KRT17P7-201ENST00000451704 1104 ntBASIC15.38■□□□□ 0.05
VPS4BO75351 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS4BO75351 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
VPS4BO75351 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.38■□□□□ 0.05
VPS4BO75351 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.38■□□□□ 0.05
VPS4BO75351 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS4BO75351 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.38■□□□□ 0.05
VPS4BO75351 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
VPS4BO75351 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
VPS4BO75351 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS4BO75351 MYO15B-237ENST00000642007 4893 ntBASIC15.38■□□□□ 0.05
VPS4BO75351 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
VPS4BO75351 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.38■□□□□ 0.05
VPS4BO75351 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
VPS4BO75351 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS4BO75351 PIN1P1-201ENST00000412108 996 ntBASIC15.37■□□□□ 0.05
VPS4BO75351 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS4BO75351 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS4BO75351 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
VPS4BO75351 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.37■□□□□ 0.05
VPS4BO75351 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 KRT8P23-201ENST00000560090 1207 ntBASIC15.37■□□□□ 0.05
VPS4BO75351 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
VPS4BO75351 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS4BO75351 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
VPS4BO75351 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS4BO75351 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS4BO75351 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS4BO75351 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 147.4 ms