Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 C20orf181-201ENST00000623918 480 ntBASIC11.77□□□□□ -0.53
LINC00477Q96M19 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 STRN-202ENST00000379213 2254 ntTSL 5 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 AC009090.5-201ENST00000624886 2285 ntBASIC11.77□□□□□ -0.53
LINC00477Q96M19 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LINC00477Q96M19 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC11.77□□□□□ -0.53
LINC00477Q96M19 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 SLC25A1P1-201ENST00000528351 927 ntBASIC11.76□□□□□ -0.53
LINC00477Q96M19 HNRNPUP1-201ENST00000554987 333 ntBASIC11.76□□□□□ -0.53
LINC00477Q96M19 RARRES2P9-201ENST00000565168 469 ntBASIC11.76□□□□□ -0.53
LINC00477Q96M19 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 SPIB-207ENST00000597855 564 ntTSL 4 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 MTDHP5-201ENST00000598980 586 ntBASIC11.76□□□□□ -0.53
LINC00477Q96M19 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 CTBP1-AS2-206ENST00000581398 5652 ntBASIC11.76□□□□□ -0.53
LINC00477Q96M19 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00477Q96M19 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
LINC00477Q96M19 AGAP7P-201ENST00000582299 2062 ntBASIC11.75□□□□□ -0.53
LINC00477Q96M19 AGAP14-201ENST00000624701 2060 ntBASIC11.75□□□□□ -0.53
LINC00477Q96M19 MROH4P-201ENST00000431302 1578 ntBASIC11.75□□□□□ -0.53
LINC00477Q96M19 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 GPI-205ENST00000586425 1799 ntTSL 5 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms