Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 NOP2-211ENST00000540228 668 ntTSL 2 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 KRT8P35-201ENST00000483942 1338 ntBASIC15.16■□□□□ 0.02
LMX1AQ8TE12 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 PRORSD1P-202ENST00000563365 2154 ntBASIC15.15■□□□□ 0.02
LMX1AQ8TE12 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AC025279.2-201ENST00000569730 653 ntBASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AC145423.3-201ENST00000615987 467 ntBASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AC009542.2-202ENST00000619004 1067 ntBASIC15.15■□□□□ 0.02
LMX1AQ8TE12 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1AQ8TE12 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 AC006449.5-201ENST00000610658 2098 ntBASIC15.14■□□□□ 0.01
LMX1AQ8TE12 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 AC025181.2-201ENST00000606994 802 ntBASIC15.14■□□□□ 0.01
LMX1AQ8TE12 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.14■□□□□ 0.01
LMX1AQ8TE12 GPR182-203ENST00000622922 591 ntBASIC15.14■□□□□ 0.01
LMX1AQ8TE12 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms