Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC9.36□□□□□ -0.91
HSPG2P98160 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC9.36□□□□□ -0.91
HSPG2P98160 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 AL109809.1-201ENST00000418979 1367 ntBASIC9.36□□□□□ -0.91
HSPG2P98160 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC9.36□□□□□ -0.91
HSPG2P98160 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
HSPG2P98160 AC092638.2-201ENST00000441105 947 ntBASIC9.36□□□□□ -0.91
HSPG2P98160 AP000358.1-201ENST00000456260 156 ntBASIC9.36□□□□□ -0.91
HSPG2P98160 FTH1P22-201ENST00000456305 520 ntBASIC9.36□□□□□ -0.91
HSPG2P98160 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC9.36□□□□□ -0.91
HSPG2P98160 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC9.36□□□□□ -0.91
HSPG2P98160 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
HSPG2P98160 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC9.36□□□□□ -0.91
HSPG2P98160 AC020910.5-201ENST00000623668 1865 ntBASIC9.36□□□□□ -0.91
HSPG2P98160 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
HSPG2P98160 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
HSPG2P98160 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
HSPG2P98160 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
HSPG2P98160 AC108724.1-201ENST00000481669 352 ntBASIC9.36□□□□□ -0.91
HSPG2P98160 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC9.36□□□□□ -0.91
HSPG2P98160 PHBP15-201ENST00000574228 665 ntBASIC9.36□□□□□ -0.91
HSPG2P98160 HMGB1P24-201ENST00000611897 328 ntBASIC9.36□□□□□ -0.91
HSPG2P98160 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
HSPG2P98160 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
HSPG2P98160 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC9.36□□□□□ -0.91
HSPG2P98160 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 AC012313.1-201ENST00000593393 3059 ntBASIC9.36□□□□□ -0.91
HSPG2P98160 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
HSPG2P98160 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC9.36□□□□□ -0.91
HSPG2P98160 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
HSPG2P98160 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
HSPG2P98160 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC9.35□□□□□ -0.91
HSPG2P98160 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
HSPG2P98160 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC9.35□□□□□ -0.91
HSPG2P98160 AC002472.3-201ENST00000640124 621 ntBASIC9.35□□□□□ -0.91
HSPG2P98160 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
HSPG2P98160 STK26-204ENST00000481105 1835 ntTSL 2 BASIC9.35□□□□□ -0.91
HSPG2P98160 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 FAM90A2P-201ENST00000511144 1395 ntBASIC9.35□□□□□ -0.91
HSPG2P98160 FAM90A25P-201ENST00000528404 1395 ntBASIC9.35□□□□□ -0.91
HSPG2P98160 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC9.35□□□□□ -0.91
HSPG2P98160 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
HSPG2P98160 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC9.35□□□□□ -0.91
HSPG2P98160 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC9.35□□□□□ -0.91
HSPG2P98160 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 SRP14-204ENST00000558720 780 ntTSL 2 BASIC9.35□□□□□ -0.91
HSPG2P98160 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC9.35□□□□□ -0.91
HSPG2P98160 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
HSPG2P98160 MIR6769A-201ENST00000617340 73 ntBASIC9.35□□□□□ -0.91
HSPG2P98160 MIR6125-201ENST00000618986 96 ntBASIC9.35□□□□□ -0.91
HSPG2P98160 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC9.35□□□□□ -0.91
HSPG2P98160 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC9.35□□□□□ -0.91
HSPG2P98160 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC9.35□□□□□ -0.91
HSPG2P98160 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC9.35□□□□□ -0.91
HSPG2P98160 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC9.35□□□□□ -0.91
HSPG2P98160 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC9.35□□□□□ -0.91
HSPG2P98160 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 MST1L-201ENST00000442552 2185 ntBASIC9.35□□□□□ -0.91
HSPG2P98160 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HSPG2P98160 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
HSPG2P98160 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms