Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM4P67936 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 AC098831.1-202ENST00000438821 336 ntBASIC17.6■□□□□ 0.41
TPM4P67936 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM4P67936 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM4P67936 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM4P67936 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.6■□□□□ 0.41
TPM4P67936 AC061975.2-201ENST00000581722 295 ntBASIC17.6■□□□□ 0.41
TPM4P67936 SPTSSB-204ENST00000617024 1292 ntBASIC17.6■□□□□ 0.41
TPM4P67936 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM4P67936 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM4P67936 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
TPM4P67936 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.6■□□□□ 0.41
TPM4P67936 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM4P67936 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM4P67936 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM4P67936 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM4P67936 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 ZBED1P1-201ENST00000502364 1930 ntBASIC17.59■□□□□ 0.41
TPM4P67936 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM4P67936 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM4P67936 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TPM4P67936 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.59■□□□□ 0.41
TPM4P67936 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.59■□□□□ 0.41
TPM4P67936 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.59■□□□□ 0.41
TPM4P67936 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM4P67936 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.59■□□□□ 0.41
TPM4P67936 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.59■□□□□ 0.41
TPM4P67936 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
TPM4P67936 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC17.59■□□□□ 0.41
TPM4P67936 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
TPM4P67936 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 LINC00552-201ENST00000625151 2579 ntBASIC17.59■□□□□ 0.41
TPM4P67936 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
TPM4P67936 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 ADAMTS7P1-201ENST00000613213 4793 ntBASIC17.59■□□□□ 0.41
TPM4P67936 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM4P67936 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM4P67936 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
TPM4P67936 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TPM4P67936 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TPM4P67936 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TPM4P67936 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TPM4P67936 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TPM4P67936 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
TPM4P67936 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
TPM4P67936 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TPM4P67936 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
TPM4P67936 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.58■□□□□ 0.41
TPM4P67936 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC17.58■□□□□ 0.41
TPM4P67936 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TPM4P67936 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TPM4P67936 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.58■□□□□ 0.4
TPM4P67936 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
TPM4P67936 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms