Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.4■□□□□ 0.06
LIMK1P53667 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LIMK1P53667 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LIMK1P53667 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.4■□□□□ 0.06
LIMK1P53667 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.4■□□□□ 0.06
LIMK1P53667 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.4■□□□□ 0.06
LIMK1P53667 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
LIMK1P53667 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 MIR33B-201ENST00000385104 96 ntBASIC15.4■□□□□ 0.06
LIMK1P53667 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.4■□□□□ 0.06
LIMK1P53667 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.4■□□□□ 0.06
LIMK1P53667 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC15.4■□□□□ 0.06
LIMK1P53667 PTPA-217ENST00000434095 870 ntTSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.4■□□□□ 0.06
LIMK1P53667 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.4■□□□□ 0.06
LIMK1P53667 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 MIR4741-201ENST00000579822 90 ntBASIC15.4■□□□□ 0.06
LIMK1P53667 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.4■□□□□ 0.06
LIMK1P53667 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.4■□□□□ 0.06
LIMK1P53667 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 AC138951.2-201ENST00000623455 1161 ntBASIC15.4■□□□□ 0.06
LIMK1P53667 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.4■□□□□ 0.06
LIMK1P53667 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.4■□□□□ 0.06
LIMK1P53667 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIMK1P53667 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.4■□□□□ 0.06
LIMK1P53667 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.4■□□□□ 0.06
LIMK1P53667 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.4■□□□□ 0.06
LIMK1P53667 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
LIMK1P53667 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
LIMK1P53667 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.39■□□□□ 0.05
LIMK1P53667 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
LIMK1P53667 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC15.39■□□□□ 0.05
LIMK1P53667 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 KRTAP19-9P-201ENST00000421795 191 ntBASIC15.39■□□□□ 0.05
LIMK1P53667 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
LIMK1P53667 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.39■□□□□ 0.05
LIMK1P53667 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC15.39■□□□□ 0.05
LIMK1P53667 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.39■□□□□ 0.05
LIMK1P53667 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.39■□□□□ 0.05
LIMK1P53667 AC078819.1-201ENST00000547454 765 ntBASIC15.39■□□□□ 0.05
LIMK1P53667 AC012085.1-201ENST00000548270 765 ntBASIC15.39■□□□□ 0.05
LIMK1P53667 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.39■□□□□ 0.05
LIMK1P53667 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.39■□□□□ 0.05
LIMK1P53667 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.39■□□□□ 0.05
LIMK1P53667 MIR5572-201ENST00000583188 137 ntBASIC15.39■□□□□ 0.05
LIMK1P53667 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.39■□□□□ 0.05
LIMK1P53667 AC132938.4-201ENST00000623835 848 ntBASIC15.39■□□□□ 0.05
LIMK1P53667 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC15.39■□□□□ 0.05
LIMK1P53667 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC15.39■□□□□ 0.05
LIMK1P53667 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.39■□□□□ 0.05
LIMK1P53667 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIMK1P53667 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms