Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NUP98P52948 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC19.03■□□□□ 0.64
NUP98P52948 AC009093.2-202ENST00000620513 2079 ntBASIC19.03■□□□□ 0.64
NUP98P52948 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 AC008132.1-202ENST00000342005 1389 ntBASIC19.03■□□□□ 0.64
NUP98P52948 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC19.03■□□□□ 0.64
NUP98P52948 FKBP4P6-201ENST00000457486 1332 ntBASIC19.03■□□□□ 0.64
NUP98P52948 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.03■□□□□ 0.64
NUP98P52948 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
NUP98P52948 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
NUP98P52948 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC19.03■□□□□ 0.64
NUP98P52948 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC19.03■□□□□ 0.64
NUP98P52948 AC009955.4-201ENST00000597192 544 ntBASIC19.03■□□□□ 0.64
NUP98P52948 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
NUP98P52948 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 AC002472.3-201ENST00000640124 621 ntBASIC19.03■□□□□ 0.64
NUP98P52948 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
NUP98P52948 AC011840.2-201ENST00000563063 1520 ntBASIC19.03■□□□□ 0.64
NUP98P52948 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC19.03■□□□□ 0.64
NUP98P52948 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.03■□□□□ 0.64
NUP98P52948 AP005117.1-202ENST00000581724 1908 ntBASIC19.03■□□□□ 0.64
NUP98P52948 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NUP98P52948 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.03■□□□□ 0.64
NUP98P52948 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
NUP98P52948 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NUP98P52948 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NUP98P52948 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.02■□□□□ 0.64
NUP98P52948 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC19.02■□□□□ 0.64
NUP98P52948 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC19.02■□□□□ 0.64
NUP98P52948 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.02■□□□□ 0.64
NUP98P52948 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC19.02■□□□□ 0.64
NUP98P52948 KLK3-207ENST00000595952 969 ntTSL 3 BASIC19.02■□□□□ 0.64
NUP98P52948 AC068587.8-201ENST00000641239 219 ntBASIC19.02■□□□□ 0.64
NUP98P52948 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
NUP98P52948 ZBTB45P1-201ENST00000452761 1456 ntBASIC19.02■□□□□ 0.64
NUP98P52948 CICP11-201ENST00000434745 2827 ntBASIC19.02■□□□□ 0.64
NUP98P52948 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
NUP98P52948 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.02■□□□□ 0.64
NUP98P52948 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NUP98P52948 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.02■□□□□ 0.64
NUP98P52948 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NUP98P52948 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NUP98P52948 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
NUP98P52948 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NUP98P52948 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC19.02■□□□□ 0.64
NUP98P52948 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC19.02■□□□□ 0.64
NUP98P52948 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.64
NUP98P52948 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NUP98P52948 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NUP98P52948 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NUP98P52948 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
NUP98P52948 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
NUP98P52948 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC19.02■□□□□ 0.63
NUP98P52948 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
NUP98P52948 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
NUP98P52948 AL662890.1-201ENST00000396818 632 ntBASIC19.02■□□□□ 0.63
NUP98P52948 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC19.02■□□□□ 0.63
NUP98P52948 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC19.02■□□□□ 0.63
NUP98P52948 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
NUP98P52948 CSH2-206ENST00000560142 749 ntTSL 5 BASIC19.02■□□□□ 0.63
NUP98P52948 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC19.02■□□□□ 0.63
NUP98P52948 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
NUP98P52948 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC19.02■□□□□ 0.63
NUP98P52948 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
NUP98P52948 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
NUP98P52948 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC19.01■□□□□ 0.63
NUP98P52948 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 AC004899.1-201ENST00000424687 1714 ntBASIC19.01■□□□□ 0.63
NUP98P52948 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 AL138725.1-201ENST00000407347 1314 ntBASIC19.01■□□□□ 0.63
NUP98P52948 AL008718.2-201ENST00000609206 1313 ntBASIC19.01■□□□□ 0.63
NUP98P52948 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 SERF2-209ENST00000409646 559 ntTSL 4 BASIC19.01■□□□□ 0.63
NUP98P52948 AC007274.2-201ENST00000421675 662 ntBASIC19.01■□□□□ 0.63
NUP98P52948 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.01■□□□□ 0.63
NUP98P52948 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC19.01■□□□□ 0.63
NUP98P52948 AC005324.6-201ENST00000587972 613 ntBASIC19.01■□□□□ 0.63
NUP98P52948 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 AF254983.2-201ENST00000612331 135 ntBASIC19.01■□□□□ 0.63
NUP98P52948 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC19.01■□□□□ 0.63
NUP98P52948 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 AC092850.2-201ENST00000623821 2697 ntBASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms