Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.22■□□□□ 0.19
PTPN9P43378 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
PTPN9P43378 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.22■□□□□ 0.19
PTPN9P43378 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PTPN9P43378 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.22■□□□□ 0.19
PTPN9P43378 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 AC023024.2-201ENST00000623561 1993 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PTPN9P43378 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PTPN9P43378 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PTPN9P43378 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PTPN9P43378 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
PTPN9P43378 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PTPN9P43378 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
PTPN9P43378 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
PTPN9P43378 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
PTPN9P43378 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.21■□□□□ 0.19
PTPN9P43378 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
PTPN9P43378 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.21■□□□□ 0.19
PTPN9P43378 BCRP1-201ENST00000444246 691 ntBASIC16.21■□□□□ 0.19
PTPN9P43378 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.21■□□□□ 0.19
PTPN9P43378 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 AC093004.1-201ENST00000508850 424 ntBASIC16.21■□□□□ 0.19
PTPN9P43378 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.21■□□□□ 0.19
PTPN9P43378 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.21■□□□□ 0.19
PTPN9P43378 RRP7BP-205ENST00000566851 833 ntBASIC16.21■□□□□ 0.19
PTPN9P43378 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.21■□□□□ 0.19
PTPN9P43378 AC036164.1-201ENST00000570544 333 ntBASIC16.21■□□□□ 0.19
PTPN9P43378 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
PTPN9P43378 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.21■□□□□ 0.19
PTPN9P43378 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PTPN9P43378 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PTPN9P43378 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PTPN9P43378 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PTPN9P43378 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTPN9P43378 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PTPN9P43378 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.21■□□□□ 0.18
PTPN9P43378 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
PTPN9P43378 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PTPN9P43378 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
PTPN9P43378 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
PTPN9P43378 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PTPN9P43378 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.2■□□□□ 0.18
PTPN9P43378 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PTPN9P43378 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.2■□□□□ 0.18
PTPN9P43378 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.2■□□□□ 0.18
PTPN9P43378 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.2■□□□□ 0.18
PTPN9P43378 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PTPN9P43378 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.2■□□□□ 0.18
PTPN9P43378 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.2■□□□□ 0.18
PTPN9P43378 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 AC104457.1-201ENST00000401024 814 ntBASIC16.2■□□□□ 0.18
PTPN9P43378 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 FAM207CP-201ENST00000443486 507 ntBASIC16.2■□□□□ 0.18
PTPN9P43378 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
PTPN9P43378 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.2■□□□□ 0.18
PTPN9P43378 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.2■□□□□ 0.18
PTPN9P43378 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
PTPN9P43378 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.2■□□□□ 0.18
PTPN9P43378 AL355385.1-201ENST00000606123 409 ntBASIC16.2■□□□□ 0.18
PTPN9P43378 AC099568.2-201ENST00000609194 695 ntBASIC16.2■□□□□ 0.18
PTPN9P43378 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.2■□□□□ 0.18
PTPN9P43378 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.2■□□□□ 0.18
PTPN9P43378 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
PTPN9P43378 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PTPN9P43378 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.2■□□□□ 0.18
PTPN9P43378 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms