Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 WFDC1-204ENST00000613603 549 ntBASIC12.13□□□□□ -0.47
HOXD3P31249 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC12.13□□□□□ -0.47
HOXD3P31249 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 AL607033.1-201ENST00000623900 1599 ntBASIC12.13□□□□□ -0.47
HOXD3P31249 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
HOXD3P31249 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 PRAL-201ENST00000624952 3286 ntBASIC12.12□□□□□ -0.47
HOXD3P31249 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 AC138969.2-201ENST00000532739 9932 ntBASIC12.12□□□□□ -0.47
HOXD3P31249 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC12.12□□□□□ -0.47
HOXD3P31249 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.12□□□□□ -0.47
HOXD3P31249 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
HOXD3P31249 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 AC074338.1-201ENST00000416825 156 ntBASIC12.12□□□□□ -0.47
HOXD3P31249 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 RPL13P2-201ENST00000440687 659 ntBASIC12.12□□□□□ -0.47
HOXD3P31249 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC12.12□□□□□ -0.47
HOXD3P31249 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC12.12□□□□□ -0.47
HOXD3P31249 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HOXD3P31249 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 PIGL-212ENST00000581006 554 ntTSL 4 BASIC12.12□□□□□ -0.47
HOXD3P31249 APOC4-201ENST00000591600 348 ntTSL 3 BASIC12.12□□□□□ -0.47
HOXD3P31249 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC12.12□□□□□ -0.47
HOXD3P31249 AC097359.3-201ENST00000603982 1210 ntBASIC12.12□□□□□ -0.47
HOXD3P31249 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.12□□□□□ -0.47
HOXD3P31249 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
HOXD3P31249 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXD3P31249 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.12□□□□□ -0.47
HOXD3P31249 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXD3P31249 NORAD-201ENST00000565493 5339 ntBASIC12.12□□□□□ -0.47
HOXD3P31249 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.11□□□□□ -0.47
HOXD3P31249 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
HOXD3P31249 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXD3P31249 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
HOXD3P31249 AC068418.2-201ENST00000577309 3703 ntBASIC12.11□□□□□ -0.47
HOXD3P31249 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms