Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP1O15259 HNRNPUP1-201ENST00000554987 333 ntBASIC19.69■□□□□ 0.74
NPHP1O15259 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP1O15259 IGHV3OR16-16-201ENST00000563644 343 ntBASIC19.69■□□□□ 0.74
NPHP1O15259 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP1O15259 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP1O15259 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.69■□□□□ 0.74
NPHP1O15259 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.69■□□□□ 0.74
NPHP1O15259 AC008687.7-202ENST00000637404 953 ntBASIC19.69■□□□□ 0.74
NPHP1O15259 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP1O15259 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP1O15259 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
NPHP1O15259 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19.69■□□□□ 0.74
NPHP1O15259 AL607033.1-201ENST00000623900 1599 ntBASIC19.69■□□□□ 0.74
NPHP1O15259 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
NPHP1O15259 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.69■□□□□ 0.74
NPHP1O15259 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPHP1O15259 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC19.68■□□□□ 0.74
NPHP1O15259 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 MIR326-201ENST00000362220 95 ntBASIC19.68■□□□□ 0.74
NPHP1O15259 TPO-206ENST00000382269 1155 ntTSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 AC136604.1-201ENST00000418535 575 ntBASIC19.68■□□□□ 0.74
NPHP1O15259 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC19.68■□□□□ 0.74
NPHP1O15259 KRT18P25-201ENST00000508931 1278 ntBASIC19.68■□□□□ 0.74
NPHP1O15259 PARP8-218ENST00000513738 596 ntTSL 4 BASIC19.68■□□□□ 0.74
NPHP1O15259 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.68■□□□□ 0.74
NPHP1O15259 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC19.68■□□□□ 0.74
NPHP1O15259 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.68■□□□□ 0.74
NPHP1O15259 AC093813.1-201ENST00000605066 256 ntBASIC19.68■□□□□ 0.74
NPHP1O15259 AL022328.3-201ENST00000607943 679 ntBASIC19.68■□□□□ 0.74
NPHP1O15259 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.68■□□□□ 0.74
NPHP1O15259 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.68■□□□□ 0.74
NPHP1O15259 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.68■□□□□ 0.74
NPHP1O15259 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
NPHP1O15259 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
NPHP1O15259 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPHP1O15259 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
NPHP1O15259 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
NPHP1O15259 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
NPHP1O15259 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
NPHP1O15259 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
NPHP1O15259 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
NPHP1O15259 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
NPHP1O15259 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.67■□□□□ 0.74
NPHP1O15259 KRT8P13-201ENST00000463294 1010 ntBASIC19.67■□□□□ 0.74
NPHP1O15259 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC19.67■□□□□ 0.74
NPHP1O15259 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC19.67■□□□□ 0.74
NPHP1O15259 AC022137.2-201ENST00000503482 481 ntBASIC19.67■□□□□ 0.74
NPHP1O15259 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC19.67■□□□□ 0.74
NPHP1O15259 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.67■□□□□ 0.74
NPHP1O15259 DUX4L45-201ENST00000566406 1057 ntBASIC19.67■□□□□ 0.74
NPHP1O15259 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.67■□□□□ 0.74
NPHP1O15259 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC19.67■□□□□ 0.74
NPHP1O15259 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 AL139099.5-201ENST00000635274 300 ntBASIC19.67■□□□□ 0.74
NPHP1O15259 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
NPHP1O15259 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms