Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 KRT17P5-201ENST00000332088 839 ntBASIC11.85□□□□□ -0.51
COL6A5A8TX70 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC11.85□□□□□ -0.51
COL6A5A8TX70 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 LINC01144-201ENST00000626198 1710 ntBASIC11.84□□□□□ -0.51
COL6A5A8TX70 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 PUDPP3-201ENST00000445368 636 ntBASIC11.84□□□□□ -0.51
COL6A5A8TX70 IGKV1OR-2-201ENST00000457995 350 ntBASIC11.84□□□□□ -0.51
COL6A5A8TX70 DUX4L46-201ENST00000566845 751 ntBASIC11.84□□□□□ -0.51
COL6A5A8TX70 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 AC005041.3-201ENST00000606287 649 ntBASIC11.84□□□□□ -0.51
COL6A5A8TX70 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 PSME2-217ENST00000615264 874 ntTSL 5 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 PSME2-218ENST00000630027 185 ntTSL 3 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 AL158070.2-201ENST00000623713 1621 ntBASIC11.84□□□□□ -0.51
COL6A5A8TX70 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 AC005052.1-201ENST00000625181 2492 ntBASIC11.84□□□□□ -0.51
COL6A5A8TX70 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
COL6A5A8TX70 AC084781.1-201ENST00000613737 656 ntBASIC11.84□□□□□ -0.51
COL6A5A8TX70 CMC2-224ENST00000630396 481 ntTSL 5 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC11.84□□□□□ -0.51
COL6A5A8TX70 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC11.83□□□□□ -0.51
COL6A5A8TX70 KRT18P9-201ENST00000604826 1300 ntBASIC11.83□□□□□ -0.51
COL6A5A8TX70 INE2-201ENST00000630399 1874 ntBASIC11.83□□□□□ -0.51
COL6A5A8TX70 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
COL6A5A8TX70 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 AC007613.1-201ENST00000572811 2597 ntBASIC11.83□□□□□ -0.52
COL6A5A8TX70 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 NHP2P1-201ENST00000335274 462 ntBASIC11.83□□□□□ -0.52
COL6A5A8TX70 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 MIR566-201ENST00000385187 94 ntBASIC11.83□□□□□ -0.52
COL6A5A8TX70 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms