Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 AC011495.1-201ENST00000498085 584 ntBASIC15.67■□□□□ 0.1
LHX3Q9UBR4 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 AC132938.2-201ENST00000579188 680 ntBASIC15.67■□□□□ 0.1
LHX3Q9UBR4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 AC005252.2-201ENST00000624630 1141 ntBASIC15.67■□□□□ 0.1
LHX3Q9UBR4 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.67■□□□□ 0.1
LHX3Q9UBR4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 AL591163.1-201ENST00000641757 987 ntBASIC15.67■□□□□ 0.1
LHX3Q9UBR4 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 AL138799.1-201ENST00000448213 1675 ntBASIC15.67■□□□□ 0.1
LHX3Q9UBR4 C18orf15-201ENST00000623680 2534 ntBASIC15.66■□□□□ 0.1
LHX3Q9UBR4 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AL512384.1-201ENST00000406683 331 ntBASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AC005034.1-201ENST00000426657 489 ntBASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 CR383656.12-201ENST00000549567 513 ntBASIC15.66■□□□□ 0.1
LHX3Q9UBR4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 CLUHP6-201ENST00000580789 941 ntBASIC15.66■□□□□ 0.1
LHX3Q9UBR4 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AL035252.4-201ENST00000624174 288 ntBASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AL645728.2-202ENST00000641679 227 ntBASIC15.66■□□□□ 0.1
LHX3Q9UBR4 PPT1-215ENST00000641471 2368 ntBASIC15.66■□□□□ 0.1
LHX3Q9UBR4 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX3Q9UBR4 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 KRT8P44-201ENST00000441609 1350 ntBASIC15.65■□□□□ 0.1
LHX3Q9UBR4 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX3Q9UBR4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms