Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 AC087499.6-201ENST00000411576 835 ntBASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 KRT18P64-201ENST00000434946 1219 ntBASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 RARRES2P5-201ENST00000564013 466 ntBASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 SLC7A15P-201ENST00000424028 1363 ntBASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 AC138969.3-201ENST00000546612 1459 ntBASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 AC138932.2-201ENST00000548268 1459 ntBASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 AC126755.4-201ENST00000549796 1459 ntBASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 AP005117.1-202ENST00000581724 1908 ntBASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AP003680.1-201ENST00000598970 3660 ntBASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 CRB3P1-201ENST00000449338 276 ntBASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AC055876.2-201ENST00000531834 546 ntBASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 API5-211ENST00000534695 560 ntTSL 5 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AC190387.1-201ENST00000551683 408 ntBASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 RRP7BP-205ENST00000566851 833 ntBASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 AC099568.2-201ENST00000609194 695 ntBASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRIM39Q9HCM9 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms