Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 AL121723.1-201ENST00000445194 1519 ntBASIC12.11□□□□□ -0.47
CCDC140Q96MF4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 AL512638.1-201ENST00000457493 794 ntBASIC12.11□□□□□ -0.47
CCDC140Q96MF4 KRT18P43-201ENST00000469825 1281 ntBASIC12.11□□□□□ -0.47
CCDC140Q96MF4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 AC135586.1-201ENST00000539323 574 ntBASIC12.11□□□□□ -0.47
CCDC140Q96MF4 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 AC027796.2-201ENST00000575326 344 ntBASIC12.11□□□□□ -0.47
CCDC140Q96MF4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 DBET-201ENST00000630918 3363 ntBASIC12.11□□□□□ -0.47
CCDC140Q96MF4 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CCDC140Q96MF4 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 RPL5P21-201ENST00000404620 815 ntBASIC12.1□□□□□ -0.47
CCDC140Q96MF4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 MRPS18AP1-201ENST00000414458 589 ntBASIC12.1□□□□□ -0.47
CCDC140Q96MF4 FAM8A3P-201ENST00000427218 844 ntBASIC12.1□□□□□ -0.47
CCDC140Q96MF4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 AL589987.1-201ENST00000453380 819 ntBASIC12.1□□□□□ -0.47
CCDC140Q96MF4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 TIMM17BP1-201ENST00000545713 516 ntBASIC12.1□□□□□ -0.47
CCDC140Q96MF4 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 AC126365.1-201ENST00000578585 1514 ntBASIC12.1□□□□□ -0.47
CCDC140Q96MF4 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms